Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 5.0e-140 501.1 259 100.0
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.7e-109 399.1 230 89.1
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 3.3e-107 392.1 232 87.9
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.9e-100 368.6 227 85.9
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 3.9e-100 368.6 233 82.8
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.6e-100 367.5 239 82.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.2e-98 363.6 239 81.2
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.2e-98 363.6 227 84.6
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.2e-98 363.6 239 81.2
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 3.9e-84 315.5 239 69.5
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 5.6e-83 311.6 236 71.6
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.6e-82 310.1 217 76.5
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 2.8e-82 309.3 235 69.8
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 6.2e-82 308.1 236 70.3
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 6.2e-82 308.1 234 71.8
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.8e-81 306.6 235 68.5
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 2.4e-81 306.2 240 67.9
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.4e-81 306.2 245 67.3
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.2e-80 303.9 204 77.0
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.5e-80 303.5 236 69.5
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 2.0e-80 303.1 237 68.4
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.5e-80 302.0 237 70.0
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.7e-79 300.1 235 69.8
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.2e-79 299.7 237 68.8
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.1e-78 297.4 242 65.7
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.4e-78 296.2 237 66.7
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 3.2e-78 295.8 242 64.9
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 3.2e-78 295.8 242 64.9
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 9.3e-78 294.3 234 70.9
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 9.3e-78 294.3 237 69.2
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 9.3e-78 294.3 236 67.8
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 2.7e-77 292.7 242 64.9
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.7e-77 292.7 240 66.7
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 4.6e-77 292.0 214 73.4
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 4.6e-77 292.0 236 67.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 4.6e-77 292.0 234 67.5
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 6.0e-77 291.6 240 68.8
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.8e-76 290.0 236 69.1
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.8e-76 290.0 242 64.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.3e-76 289.7 239 65.3
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 2.3e-76 289.7 234 66.2
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 3.0e-76 289.3 245 64.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 3.9e-76 288.9 236 66.9
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.9e-76 288.9 242 63.6
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 3.9e-76 288.9 225 70.7
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 6.7e-76 288.1 235 66.4
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.9e-75 286.6 234 65.8
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 3.3e-75 285.8 235 66.8
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 4.3e-75 285.4 235 67.2
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 7.4e-75 284.6 244 66.0
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 9.6e-75 284.3 229 69.4
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.3e-74 283.9 244 66.8
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 2.1e-74 283.1 236 62.3
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 2.1e-74 283.1 242 62.8
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 3.7e-74 282.3 243 62.6
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 3.7e-74 282.3 244 62.7
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 3.7e-74 282.3 199 73.4
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.1e-73 280.8 235 65.1
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.4e-73 280.4 246 63.8
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.4e-73 280.4 246 63.8
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.8e-73 280.0 235 63.0
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.8e-73 280.0 252 62.7
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 2.4e-73 279.6 244 63.9
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 2.4e-73 279.6 251 63.7
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 3.1e-73 279.3 244 63.9
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 3.1e-73 279.3 248 64.1
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 9.0e-73 277.7 236 64.8
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.5e-72 276.9 244 63.9
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.0e-72 276.6 232 64.7
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.6e-72 276.2 245 60.4
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.6e-72 276.2 236 65.3
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.6e-72 276.2 234 64.5
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 1.7e-71 273.5 202 71.3
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.2e-71 273.1 193 73.6
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 3.8e-71 272.3 206 68.9
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 8.4e-71 271.2 206 68.4
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 1.1e-70 270.8 233 62.2
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 1.9e-70 270.0 237 62.0
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 1.2e-69 267.3 235 63.4
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.2e-69 267.3 251 59.8
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 2.7e-69 266.2 232 64.7
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 4.6e-69 265.4 239 61.9
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.6e-69 265.4 195 72.3
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 6.0e-69 265.0 193 72.5
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.0e-68 262.7 249 60.6
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 5.1e-68 261.9 244 61.9
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 6.7e-68 261.5 205 69.3
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.1e-67 260.8 238 62.2
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.1e-67 260.8 202 69.3
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.3e-67 259.2 205 66.8
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.6e-67 258.5 202 68.8
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.6e-66 256.9 202 67.8
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 2.8e-66 256.1 236 60.2
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 2.8e-66 256.1 224 61.6
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.7e-66 255.8 202 69.3
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 6.2e-66 255.0 201 69.2
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.3e-65 251.9 258 57.8
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 6.9e-65 251.5 235 57.4
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 9.0e-65 251.1 233 59.2
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.4e-64 249.2 247 59.5
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.5e-64 248.8 221 59.3
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.5e-64 248.8 247 59.5
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 3.2e-62 242.7 239 55.6
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 5.5e-62 241.9 244 57.0
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 7.9e-61 238.0 263 55.1
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.3e-59 232.6 225 58.2
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 7.4e-59 231.5 243 57.2
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 7.4e-59 231.5 264 54.2
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.6e-58 230.3 228 56.6
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 8.2e-58 228.0 173 69.9
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.2e-58 228.0 260 54.2
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 8.2e-58 228.0 227 56.4
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.1e-57 227.6 239 54.4
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.8e-57 226.9 195 64.1
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.4e-57 226.5 220 58.2
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 4.1e-57 225.7 215 57.2
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.5e-56 223.8 226 58.0
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.0e-56 223.4 215 56.3
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.5e-56 222.2 197 60.9
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.3e-55 220.7 231 55.0
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-55 220.3 163 71.2
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-55 220.3 276 51.4
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.7e-55 220.3 276 51.4
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.2e-55 219.9 196 61.2
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.2e-55 219.9 225 57.8
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 5.0e-55 218.8 263 54.4
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 2.5e-54 216.5 246 52.8
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.2e-53 214.2 209 58.4
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 2.7e-53 213.0 194 59.8
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 9.7e-51 204.5 145 73.8
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.8e-50 203.0 236 50.8
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.9e-47 193.0 197 57.9
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 8.5e-47 191.4 172 62.8
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.8e-44 183.7 128 73.4
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.7e-44 181.8 190 55.8
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 3.7e-42 176.0 187 55.6
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.4e-41 174.1 186 52.7
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 1.3e-39 167.5 211 50.2
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 4.2e-38 162.5 213 47.9
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 1.2e-37 161.0 217 48.8
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 6.1e-37 158.7 151 54.3
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.5e-35 154.1 214 47.2
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.0e-35 153.7 185 50.8
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.6e-35 153.3 115 68.7
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 7.4e-35 151.8 96 78.1
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.8e-34 149.1 196 49.5
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 2.2e-31 140.2 95 77.9
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 8.5e-31 138.3 199 45.2
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.4e-28 131.0 107 63.6
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.8e-26 122.5 93 64.5
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 1.9e-22 110.5 115 54.8
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 3.8e-15 86.3 110 50.9
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 7.2e-14 82.0 89 48.3
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 7.2e-14 82.0 152 41.4
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 9.5e-14 81.6 85 55.3
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.6e-13 80.9 85 55.3
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.6e-08 64.3 65 61.5
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 9.5e-06 55.1 117 32.5


User provided reference genes

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