Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 9.2e-160 567.0 321 100.0
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.9e-128 463.0 321 74.5
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 6.2e-124 448.0 322 82.0
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.5e-112 408.3 316 73.1
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-111 407.1 316 68.0
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.1e-111 406.4 316 72.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.0e-110 402.5 330 65.8
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-109 400.6 330 69.7
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.1e-99 365.5 297 63.3
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.0e-97 360.9 312 62.2
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 8.5e-97 357.8 316 61.4
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 8.8e-94 347.8 325 59.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 9.7e-93 344.4 313 56.9
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.3e-92 344.0 313 56.9
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.3e-92 344.0 320 57.5
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.4e-91 339.7 322 57.8
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.2e-90 337.4 313 56.2
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.0e-89 334.3 295 62.0
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.2e-89 333.2 312 55.1
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 2.2e-89 333.2 320 54.1
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.2e-89 333.2 326 56.4
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 6.5e-89 331.6 313 54.0
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 6.5e-89 331.6 319 55.5
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.1e-88 330.9 316 62.0
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.1e-88 330.9 322 56.2
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.4e-88 330.5 325 63.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.9e-88 330.1 320 55.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.5e-88 329.7 262 64.1
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 9.4e-88 327.8 267 64.8
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 2.7e-87 326.2 304 57.2
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.7e-87 326.2 320 55.3
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 3.6e-87 325.9 320 55.6
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 6.1e-87 325.1 255 63.9
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 6.1e-87 325.1 281 58.7
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.0e-86 324.3 297 63.6
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.0e-86 324.3 321 56.7
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 2.3e-86 323.2 267 63.7
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 3.9e-86 322.4 224 85.7
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 6.7e-86 321.6 307 58.3
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 6.7e-86 321.6 322 57.8
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 9.7e-85 317.8 317 55.2
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.7e-84 317.0 319 53.3
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.7e-84 317.0 333 53.2
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.2e-84 316.6 295 63.7
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 8.2e-84 314.7 369 52.0
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.4e-83 313.9 320 53.8
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.4e-83 313.9 320 52.5
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 5.3e-83 312.0 316 56.0
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.6e-82 310.5 318 53.1
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.6e-82 309.7 327 54.7
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 4.5e-82 308.9 314 52.5
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.9e-81 306.2 302 54.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 8.5e-81 304.7 315 54.9
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.9e-80 303.5 316 51.3
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 4.2e-80 302.4 315 52.1
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 9.4e-80 301.2 326 55.5
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 9.4e-80 301.2 326 51.5
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.6e-79 300.4 319 51.7
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 2.1e-79 300.1 326 50.0
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 2.1e-79 300.1 326 50.0
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 2.1e-79 300.1 326 50.0
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 2.1e-79 300.1 274 58.0
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 2.1e-79 300.1 309 52.1
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 2.7e-79 299.7 320 49.7
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 6.1e-79 298.5 326 49.1
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 6.1e-79 298.5 317 50.5
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.8e-78 297.0 326 49.7
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.8e-78 297.0 326 49.7
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.8e-78 297.0 326 49.4
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.8e-78 297.0 324 48.1
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.0e-78 296.2 327 49.2
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.0e-78 296.2 316 49.7
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 4.0e-78 295.8 262 61.1
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 3.4e-77 292.7 271 57.9
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 5.7e-77 292.0 315 49.5
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 7.5e-77 291.6 324 48.8
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 7.5e-77 291.6 326 48.2
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 7.5e-77 291.6 323 48.0
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 9.7e-77 291.2 323 50.5
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.8e-76 289.7 318 48.4
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.1e-75 287.7 326 47.9
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-75 287.7 327 48.6
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-75 287.7 327 48.6
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-75 287.7 327 48.6
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.1e-75 287.7 328 49.7
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.1e-75 287.7 315 50.2
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.4e-75 287.3 313 48.9
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.4e-75 287.3 327 50.2
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.8e-75 287.0 327 48.6
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.8e-75 287.0 327 48.6
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 2.4e-75 286.6 327 48.3
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 2.4e-75 286.6 327 48.3
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 4.1e-75 285.8 258 57.4
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 9.1e-75 284.6 327 48.6
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.2e-74 284.3 318 50.3
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.6e-74 283.9 317 48.3
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.0e-74 283.5 317 50.5
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.3e-73 280.8 310 48.7
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.2e-73 280.0 323 48.9
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 5.0e-73 278.9 295 50.2
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 8.5e-73 278.1 326 48.2
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.1e-72 277.7 320 45.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.5e-72 277.3 312 47.4
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 4.2e-72 275.8 320 47.8
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 4.2e-72 275.8 370 45.9
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 7.2e-72 275.0 312 46.8
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 9.4e-72 274.6 313 46.6
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 9.4e-72 274.6 312 46.8
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 2.1e-71 273.5 329 47.4
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 2.7e-71 273.1 320 47.8
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 6.1e-71 271.9 324 46.6
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.8e-70 270.4 318 44.3
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 4.0e-70 269.2 327 46.2
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.2e-70 268.9 318 44.7
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.8e-70 268.5 220 64.1
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.0e-69 266.9 329 47.4
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 2.0e-69 266.9 329 47.1
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 7.5e-69 265.0 316 44.6
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.3e-68 264.2 317 47.6
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 3.7e-68 262.7 314 46.5
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.4e-67 260.8 320 43.8
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.8e-67 260.4 329 47.4
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 3.8e-65 252.7 260 49.6
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.8e-63 246.5 317 43.5
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 1.7e-60 237.3 315 43.2
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.9e-60 235.7 258 47.3
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 4.9e-60 235.7 317 40.7
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.1e-59 234.6 321 41.7
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.0e-59 231.9 316 39.9
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 9.2e-59 231.5 415 37.3
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.2e-58 231.1 258 46.5
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.5e-58 229.6 302 42.1
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 4.5e-58 229.2 316 39.9
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.0e-57 228.0 164 70.7
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 2.8e-55 219.9 170 68.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.4e-54 217.6 339 40.7
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 8.9e-54 214.9 325 40.6
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 6.0e-50 202.2 331 38.4
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.3e-41 174.5 223 39.0
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.8e-38 164.1 158 55.7
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 4.0e-38 162.9 215 43.3
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-32 144.8 115 67.0
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.3e-32 143.3 133 51.9
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.6e-32 141.7 133 51.1
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.2e-27 126.7 88 72.7
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.3e-25 120.6 87 72.4
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.3e-25 120.6 87 72.4
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.3e-24 116.7 149 43.6
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.8e-23 112.8 101 63.4
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.2e-21 108.2 115 50.4
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.5e-21 107.8 322 28.0
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.7e-20 104.4 319 26.3
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 4.9e-20 102.8 320 26.2
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.9e-19 100.9 111 46.8
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.1e-16 91.7 324 25.9
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 5.6e-16 89.4 69 58.0
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 5.6e-16 89.4 69 58.0
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 5.6e-16 89.4 69 58.0
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 4.8e-15 86.3 84 51.2
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 3.4e-13 80.1 123 43.1
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.9e-08 64.3 91 34.1
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 5.6e-08 62.8 78 42.3


User provided reference genes

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