Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 6.1e-157 557.4 267 100.0
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 1.6e-128 463.0 268 84.7
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 1.4e-116 423.3 267 75.7
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 2.0e-112 409.5 267 73.4
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.5e-102 376.7 258 72.1
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 1.1e-100 370.5 267 67.8
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 6.8e-100 367.9 266 68.4
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 5.8e-99 364.8 267 67.0
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 2.9e-98 362.5 267 66.3
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 1.4e-97 360.1 267 66.7
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 5.4e-97 358.2 268 66.4
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 2.3e-95 352.8 269 65.1
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 2.3e-95 352.8 269 65.1
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 3.0e-95 352.4 267 63.3
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 5.1e-95 351.7 267 65.2
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 6.6e-95 351.3 260 66.2
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 1.1e-94 350.5 268 65.3
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 4.3e-94 348.6 267 65.2
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 1.2e-93 347.1 267 63.3
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 6.2e-93 344.7 266 65.4
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 2.3e-92 342.8 264 65.5
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 3.1e-92 342.4 267 63.7
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 6.8e-92 341.3 267 62.9
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 2.6e-91 339.3 266 65.0
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 4.4e-91 338.6 267 60.3
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 2.9e-90 335.9 270 63.0
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 3.7e-90 335.5 281 59.8
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 6.4e-90 334.7 263 65.0
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 2.4e-89 332.8 262 64.5
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 7.8e-88 327.8 261 63.6
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 1.3e-87 327.0 268 61.2
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 1.9e-86 323.2 267 60.7
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 4.3e-86 322.0 226 69.9
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 4.3e-86 322.0 262 60.7
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 2.1e-85 319.7 268 60.4
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 2.1e-85 319.7 267 59.2
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 3.1e-84 315.8 266 59.8
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 6.8e-84 314.7 264 59.5
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 5.8e-83 311.6 267 59.9
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 7.6e-83 311.2 265 58.9
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.3e-82 310.5 267 56.9
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 2.2e-82 309.7 275 57.8
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 8.4e-82 307.8 273 57.5
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 2.4e-81 306.2 267 59.2
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 2.4e-81 306.2 261 59.8
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 2.4e-81 306.2 261 59.8
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 2.4e-81 306.2 265 57.7
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 4.2e-81 305.4 261 60.2
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 7.1e-81 304.7 265 58.5
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 9.3e-81 304.3 267 55.8
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 9.3e-81 304.3 267 55.8
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 2.7e-80 302.8 261 59.8
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 1.0e-79 300.8 265 59.2
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 1.0e-79 300.8 264 58.0
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 2.3e-79 299.7 261 59.8
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 8.7e-79 297.7 216 69.9
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 8.7e-79 297.7 261 59.0
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 1.1e-78 297.4 268 59.3
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 9.6e-78 294.3 267 56.6
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.1e-76 290.8 198 72.2
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 4.0e-76 288.9 303 51.2
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 3.4e-75 285.8 235 64.3
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 3.4e-75 285.8 265 56.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 5.8e-75 285.0 254 56.7
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 7.6e-75 284.6 196 71.4
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 1.3e-74 283.9 232 62.5
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 8.4e-74 281.2 264 54.9
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 7.1e-73 278.1 279 51.3
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 7.1e-73 278.1 267 52.8
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 9.3e-73 277.7 266 54.5
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 9.3e-73 277.7 272 56.2
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 4.6e-72 275.4 191 68.6
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 6.0e-72 275.0 206 67.0
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.3e-71 273.1 190 70.0
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 2.5e-70 269.6 209 63.2
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 7.3e-70 268.1 265 52.8
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 7.3e-70 268.1 265 53.2
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 2.8e-69 266.2 220 62.3
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 1.1e-68 264.2 198 67.7
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 2.6e-67 259.6 288 51.4
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 9.9e-67 257.7 276 50.0
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 1.3e-66 257.3 191 64.4
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 1.1e-65 254.2 283 49.5
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 1.4e-65 253.8 268 47.8
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 4.6e-64 248.8 261 51.0
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 1.6e-61 240.4 267 49.4
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 4.0e-60 235.7 260 48.1
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 9.0e-60 234.6 272 47.8
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 1.1e-57 227.6 192 60.9
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 1.2e-56 224.2 322 43.8
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 4.6e-56 222.2 212 57.5
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 6.0e-56 221.9 161 68.3
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 2.8e-53 213.0 153 64.7
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 2.8e-53 213.0 263 45.6
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 4.8e-53 212.2 204 52.5
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 4.8e-53 212.2 284 46.1
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.5e-51 207.2 278 42.8
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 5.1e-47 192.2 188 53.2
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 1.2e-40 171.0 162 58.0
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 1.8e-39 167.2 267 39.3
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 1.8e-39 167.2 139 61.9
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 8.8e-39 164.9 179 50.3
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 5.9e-35 152.1 159 50.3
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 5.9e-35 152.1 161 50.3
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.4e-33 147.5 136 58.1
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 5.1e-31 139.0 172 47.1
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-29 133.7 107 54.2
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 1.6e-27 127.5 248 35.9
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.1e-25 121.3 70 77.1
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.0e-23 114.8 71 74.6
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 2.0e-19 100.5 173 34.7
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 2.0e-14 84.0 137 36.5
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 2.0e-14 84.0 207 31.9
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 5.9e-11 72.4 176 30.7
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 3.0e-07 60.1 268 25.7
CDE12G0320 Ceratophyllum demersum HOM05D007105 ORTHO05D009304 6.8e-07 58.9 202 28.2
BcaB04g18148 Brassica carinata HOM05D007105 ORTHO05D009304 7.5e-06 55.5 158 27.2


User provided reference genes

Program Settings