Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 1.3e-222 776.2 420 100.0
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 4.4e-186 654.8 421 81.5
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.1e-184 650.2 421 80.8
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 4.3e-165 585.1 428 72.7
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.8e-164 582.4 428 72.4
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 8.9e-163 577.4 421 70.8
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.4e-162 575.1 428 71.7
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.9e-161 572.4 421 72.4
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.2e-159 567.0 421 69.1
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.6e-159 566.6 417 69.1
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.3e-158 563.5 421 70.5
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 2.5e-157 559.3 422 69.9
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.3e-157 558.9 422 68.7
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.3e-157 558.5 420 68.1
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 9.5e-157 557.4 423 69.0
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 9.5e-157 557.4 422 68.2
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 8.1e-156 554.3 448 65.8
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.4e-155 553.5 448 65.6
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.4e-155 553.5 420 67.6
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 3.1e-155 552.4 423 69.3
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.0e-155 552.0 422 67.8
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 6.8e-155 551.2 425 66.1
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 2.0e-154 549.7 422 67.3
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 1.7e-153 546.6 411 67.6
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-152 543.9 423 68.1
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 3.2e-152 542.3 422 65.6
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 5.4e-152 541.6 422 66.8
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.2e-151 540.4 421 66.5
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 2.7e-151 539.3 420 66.4
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 2.3e-150 536.2 421 67.0
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.0e-150 535.8 430 66.7
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 3.9e-150 535.4 422 65.4
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 8.6e-150 534.3 421 66.5
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 1.1e-149 533.9 435 64.6
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 2.5e-149 532.7 437 64.1
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.6e-148 530.0 424 66.0
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 1.1e-147 527.3 411 67.4
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 2.4e-147 526.2 422 65.9
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 5.2e-147 525.0 419 65.6
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.6e-146 522.7 436 64.4
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 9.9e-146 520.8 420 65.7
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 8.4e-145 517.7 438 63.7
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.9e-144 516.5 422 63.3
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 3.5e-143 512.3 433 62.6
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 4.6e-143 511.9 422 64.9
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 6.0e-143 511.5 420 62.9
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 6.0e-143 511.5 417 63.8
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 1.7e-142 510.0 410 64.9
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.3e-141 505.4 420 63.8
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 3.6e-140 502.3 410 65.4
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.4e-139 500.4 429 62.7
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 3.4e-138 495.7 425 63.3
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 4.5e-138 495.4 427 62.3
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 7.6e-138 494.6 414 64.5
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 1.3e-137 493.8 338 73.4
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 1.6e-135 486.9 418 60.5
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.6e-135 486.9 403 63.0
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 2.3e-134 483.0 430 62.1
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.3e-134 483.0 376 65.2
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 6.7e-134 481.5 412 61.7
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 6.7e-134 481.5 431 60.1
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 1.9e-133 479.9 430 62.1
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 3.3e-133 479.2 420 61.7
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 5.6e-133 478.4 433 61.7
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 2.8e-132 476.1 433 60.5
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 3.7e-132 475.7 432 60.4
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.1e-131 474.2 411 60.1
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.1e-131 474.2 439 58.5
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.4e-131 473.8 442 58.6
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 1.8e-131 473.4 423 60.8
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 2.4e-131 473.0 442 58.6
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 4.0e-131 472.2 415 62.4
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 4.0e-131 472.2 424 59.2
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 5.3e-131 471.9 426 59.6
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 5.8e-130 468.4 425 59.5
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.8e-130 468.4 424 59.2
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 1.3e-129 467.2 424 58.5
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 2.9e-129 466.1 413 60.5
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 2.4e-128 463.0 422 60.2
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 4.2e-128 462.2 424 59.7
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 5.5e-128 461.8 424 59.9
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 6.0e-127 458.4 437 57.0
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 7.9e-127 458.0 508 51.2
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.3e-126 457.2 422 58.3
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 8.7e-126 454.5 412 58.5
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 8.7e-126 454.5 408 58.6
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 2.1e-124 449.9 372 62.1
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 1.4e-123 447.2 412 57.3
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 2.4e-123 446.4 426 57.7
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 1.2e-122 444.1 424 57.8
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 1.7e-121 440.3 420 58.3
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 5.7e-117 425.2 388 57.0
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 1.6e-116 423.7 337 62.9
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 4.8e-116 422.2 421 55.3
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 1.4e-115 420.6 423 54.4
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 3.4e-114 416.0 411 54.5
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 7.6e-114 414.8 452 53.3
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 2.5e-112 409.8 423 54.4
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.5e-109 400.6 395 56.2
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 2.5e-109 399.8 416 53.4
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 5.7e-109 398.7 333 61.0
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 7.7e-106 388.3 254 74.8
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.6e-101 373.2 454 48.7
Prupe.4G184600 Prunus persica HOM05D003094 ORTHO05D003482 1.5e-72 277.7 157 86.0
Nitab4.5_0008639g0020 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.0e-70 271.6 218 60.6
RcHm_v2.0_Chr2g0128191 Rosa chinensis HOM05D003094 ORTHO05D003482 9.8e-69 265.0 143 93.0
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 9.8e-69 265.0 419 41.1
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 1.5e-64 251.1 238 58.8
TAR622G0867 Trochodendron aralioides HOM05D003094 ORTHO05D009164 1.5e-48 198.0 295 42.4
Oeu010083.1 Olea europaea HOM05D003094 ORTHO05D003482 5.6e-48 196.1 285 41.1
Oeu010081.1 Olea europaea HOM05D003094 ORTHO05D003482 1.3e-44 184.9 138 65.2
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 3.0e-41 173.7 214 46.7
Gohir.A06G136104 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-32 145.2 101 73.3
Mapoly0002s0206 Marchantia polymorpha HOM05D003094 ORTHO05D003482 9.6e-32 142.1 171 50.9
Pp3c18_10090 Physcomitrium patens HOM05D003094 ORTHO05D003482 3.6e-31 140.2 97 71.1
CBR_g23797 Chara braunii HOM05D003094 ORTHO05D003482 8.7e-25 119.0 110 57.3
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.3e-24 117.1 216 39.4
Gorai.011G161100 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.1e-23 112.5 77 64.9
SMO367G0461 Selaginella moellendorffii HOM05D003094 ORTHO05D003482 5.3e-22 109.8 162 43.8
Gohir.D10G144200 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.5e-21 108.2 77 62.3
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 9.3e-19 99.0 168 45.2
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 9.3e-19 99.0 145 40.0
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 4.6e-18 96.7 174 39.7
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 7.9e-18 95.9 145 39.3
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 3.9e-17 93.6 146 39.7
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 3.1e-14 84.0 181 38.1
Nn3g17957 Nelumbo nucifera HOM05D003094 ORTHO05D003482 5.3e-14 83.2 54 74.1
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 6.9e-14 82.8 189 33.9
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.9e-14 82.8 118 44.1
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.6e-13 80.9 117 42.7
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 2.6e-13 80.9 155 38.7
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.3e-12 78.6 187 35.3
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 2.9e-12 77.4 85 52.9
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 6.4e-12 76.3 159 36.5
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 1.1e-11 75.5 173 32.9
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.9e-11 74.7 152 36.2
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-10 72.0 124 38.7
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 1.6e-10 71.6 159 35.8
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 1.6e-10 71.6 159 35.2
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-09 68.9 71 49.3
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.0e-09 67.4 168 32.1
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 3.9e-09 67.0 71 47.9
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 6.7e-09 66.2 173 31.8
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.7e-09 66.2 75 45.3
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.7e-09 65.9 75 44.0
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.9e-08 64.7 173 30.6
Gohir.A03G176500 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-08 64.7 107 43.0
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.9e-08 64.7 139 36.0
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 2.5e-08 64.3 106 42.5
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.5e-08 64.3 71 45.1
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 4.3e-08 63.5 180 30.6
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 9.6e-08 62.4 154 33.8
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.6e-07 61.6 72 43.1
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.1e-07 61.2 184 29.9
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 2.8e-07 60.8 174 28.7
Gohir.A13G209900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.7e-07 60.5 107 41.1
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 1.4e-06 58.5 111 42.3
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 3.1e-06 57.4 156 32.7
PRCOL_00003227 Prasinoderma coloniale HOM05D003094 ORTHO05D003482 5.3e-06 56.6 185 30.8
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.9e-06 56.2 105 36.2


User provided reference genes

Program Settings