Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 3.7e-85 318.2 158 100.0
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 1.5e-78 296.2 158 91.8
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 4.1e-76 288.1 158 89.2
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 2.2e-74 282.3 159 88.1
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 2.2e-74 282.3 159 88.1
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 2.2e-74 282.3 159 88.1
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 2.2e-74 282.3 159 88.1
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 2.9e-74 282.0 159 87.4
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 8.5e-74 280.4 159 87.4
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 4.3e-70 268.1 157 82.2
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 4.3e-70 268.1 157 82.8
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 1.7e-69 266.2 157 82.2
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 6.9e-68 260.8 155 81.3
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 1.2e-67 260.0 155 81.3
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 3.4e-67 258.5 156 80.8
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.0e-66 256.9 156 80.8
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 5.0e-66 254.6 155 78.7
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 1.9e-65 252.7 155 78.1
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 2.5e-65 252.3 157 79.0
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 7.2e-65 250.8 156 81.4
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 9.4e-65 250.4 157 79.6
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 1.2e-64 250.0 156 80.1
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 6.1e-64 247.7 155 79.4
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 6.1e-64 247.7 157 79.0
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 7.9e-64 247.3 156 79.5
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 3.0e-63 245.4 156 77.6
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 1.1e-62 243.4 178 71.3
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 1.5e-62 243.0 157 77.7
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 2.6e-62 242.3 156 79.5
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 2.6e-62 242.3 156 79.5
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.3e-62 241.9 156 76.3
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 3.3e-62 241.9 156 79.5
Sed0022338 Sechium edule HOM05D003846 ORTHO05D004726 4.4e-62 241.5 157 76.4
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 9.7e-62 240.4 157 75.8
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.3e-61 240.0 155 77.4
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 1.3e-61 240.0 157 75.2
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 1.7e-61 239.6 157 77.7
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 3.7e-61 238.4 157 77.7
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 4.8e-61 238.0 155 75.5
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 4.8e-61 238.0 156 78.2
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 6.3e-61 237.7 156 76.3
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 6.3e-61 237.7 156 76.3
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 6.3e-61 237.7 157 77.1
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 1.1e-60 236.9 156 76.9
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 1.4e-60 236.5 156 77.6
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 4.1e-60 235.0 158 77.8
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 4.1e-60 235.0 157 75.8
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 5.3e-60 234.6 157 75.8
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 5.3e-60 234.6 156 73.7
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 5.3e-60 234.6 156 73.7
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 7.0e-60 234.2 157 75.8
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 7.0e-60 234.2 155 75.5
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 7.0e-60 234.2 156 73.1
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 9.1e-60 233.8 156 76.9
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 9.1e-60 233.8 159 74.8
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 1.2e-59 233.4 158 76.6
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 2.0e-59 232.6 158 72.8
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 2.0e-59 232.6 158 72.8
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 2.6e-59 232.3 150 78.0
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 3.5e-59 231.9 159 76.1
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 5.9e-59 231.1 158 75.3
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 7.7e-59 230.7 155 74.8
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 7.7e-59 230.7 155 73.5
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 1.0e-58 230.3 157 73.9
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 1.0e-58 230.3 158 74.7
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 1.3e-58 229.9 157 75.8
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.3e-58 229.9 157 73.9
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 1.3e-58 229.9 156 71.8
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.7e-58 229.6 157 73.9
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 2.2e-58 229.2 159 74.8
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 2.2e-58 229.2 159 74.8
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.0e-58 228.0 157 73.2
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 6.5e-58 227.6 152 75.0
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 6.5e-58 227.6 157 73.9
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 8.5e-58 227.3 155 74.2
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 8.5e-58 227.3 157 73.9
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 8.5e-58 227.3 157 73.2
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 1.1e-57 226.9 159 74.2
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 1.1e-57 226.9 159 74.2
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 1.1e-57 226.9 150 77.3
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 1.5e-57 226.5 158 73.4
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 1.9e-57 226.1 156 72.4
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 1.9e-57 226.1 157 72.6
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 2.5e-57 225.7 159 74.8
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 2.5e-57 225.7 159 74.8
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 2.5e-57 225.7 156 73.1
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 2.5e-57 225.7 158 73.4
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 3.2e-57 225.3 157 71.3
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 4.2e-57 224.9 158 75.3
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.2e-57 224.9 157 72.6
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 5.5e-57 224.6 157 71.3
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 7.2e-57 224.2 159 74.2
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 7.2e-57 224.2 157 73.2
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 1.2e-56 223.4 158 71.5
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 1.2e-56 223.4 143 75.5
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 2.7e-56 222.2 156 71.2
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 3.6e-56 221.9 157 73.2
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 4.7e-56 221.5 157 72.0
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 6.1e-56 221.1 157 72.6
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 8.0e-56 220.7 158 71.5
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 1.0e-55 220.3 159 69.8
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 1.4e-55 219.9 157 72.0
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 1.4e-55 219.9 157 71.3
SEGI_01063 Sequoiadendron giganteum HOM05D003846 ORTHO05D004726 1.4e-55 219.9 158 69.6
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 1.8e-55 219.5 158 72.2
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.8e-55 219.5 156 69.9
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 3.0e-55 218.8 146 76.7
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 8.8e-55 217.2 157 70.7
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 8.8e-55 217.2 158 69.6
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 8.8e-55 217.2 137 78.1
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 8.8e-55 217.2 158 72.2
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 1.1e-54 216.9 159 69.8
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 2.0e-54 216.1 156 67.9
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 2.0e-54 216.1 160 68.8
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 3.3e-54 215.3 150 72.0
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 7.5e-54 214.2 157 70.7
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 1.3e-53 213.4 128 78.9
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 2.2e-53 212.6 158 70.3
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 2.2e-53 212.6 144 72.2
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 2.8e-53 212.2 158 70.9
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 3.7e-53 211.8 155 67.7
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 3.7e-53 211.8 210 55.7
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 4.8e-53 211.5 158 69.6
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 8.2e-53 210.7 121 83.5
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 8.2e-53 210.7 158 69.6
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 1.1e-52 210.3 141 77.3
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 2.4e-52 209.1 121 83.5
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 3.1e-52 208.8 140 76.4
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 3.1e-52 208.8 144 70.8
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 4.1e-52 208.4 121 82.6
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 5.3e-52 208.0 158 69.0
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 1.2e-51 206.8 121 82.6
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.0e-51 206.1 128 78.9
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 2.7e-51 205.7 157 69.4
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 2.7e-51 205.7 157 69.4
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.5e-51 205.3 124 81.5
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 4.5e-51 204.9 140 75.0
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 7.7e-51 204.1 155 65.2
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 1.0e-50 203.8 133 76.7
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 2.2e-50 202.6 156 68.6
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 3.8e-50 201.8 139 71.2
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 3.8e-50 201.8 121 79.3
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 5.0e-50 201.4 113 86.7
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 1.9e-49 199.5 163 65.6
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 1.6e-48 196.4 116 84.5
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 2.7e-48 195.7 142 73.2
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 3.6e-48 195.3 161 64.6
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 2.3e-47 192.6 129 73.6
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 3.0e-47 192.2 162 63.6
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 1.2e-46 190.3 111 82.0
Pp3c10_21560 Physcomitrium patens HOM05D003846 ORTHO05D004726 1.1e-44 183.7 127 71.7
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 1.6e-43 179.9 112 77.7
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 2.0e-43 179.5 113 76.1
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 3.5e-43 178.7 135 66.7
GSVIVG01011936001 Vitis vinifera HOM05D003846 ORTHO05D004726 5.5e-41 171.4 157 61.1
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 3.6e-40 168.7 89 89.9
DCAR_011545 Daucus carota HOM05D003846 ORTHO05D004726 7.5e-38 161.0 83 91.6
CBR_g40856 Chara braunii HOM05D003846 ORTHO05D004726 8.6e-34 147.5 123 60.2
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 1.7e-29 133.3 99 67.7
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-28 130.6 104 64.4
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 1.6e-27 126.7 112 58.0
Lsat_1_v5_gn_4_145001 Lactuca sativa HOM05D003846 ORTHO05D004726 3.5e-27 125.6 104 65.4
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 5.0e-26 121.7 97 63.9
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 8.6e-26 120.9 85 69.4
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 8.6e-26 120.9 85 69.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.5e-25 120.2 81 71.6
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 3.4e-22 109.0 89 65.2
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 9.8e-22 107.5 86 58.1
Manes.11G039928 Manihot esculenta HOM05D000085 ORTHO05D250131 2.2e-21 106.3 111 51.4
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 3.7e-21 105.5 110 50.9
Manes.11G040408 Manihot esculenta HOM05D003846 ORTHO05D004726 1.1e-20 104.0 87 58.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 4.1e-20 102.1 71 73.2
CDE05G0888 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 6.0e-19 98.2 139 42.4
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 5.0e-18 95.1 54 81.5
Nn4g23759 Nelumbo nucifera HOM05D003846 ORTHO05D004726 1.8e-15 86.7 70 65.7
Lj6A762T41 Lonicera japonica HOM05D003846 ORTHO05D004726 1.2e-14 84.0 55 72.7
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.2e-13 79.7 48 77.1
CsaV3_5G034070 Cucumis sativus L. HOM05D000040 ORTHO05D000759 1.2e-08 63.9 73 50.7
MD14G1222900 Malus domestica HOM05D003846 ORTHO05D248887 1.2e-08 63.9 34 88.2
FAN12G0550 Fragaria x ananassa HOM05D003846 ORTHO05D004726 1.6e-08 63.5 63 58.7
C06p41190 Brassica napus HOM05D003846 ORTHO05D004726 3.6e-08 62.4 40 72.5


User provided reference genes

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