Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 0.0e+00 1091.3 543 100.0
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 5.7e-295 1016.9 543 91.7
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 4.8e-294 1013.8 543 92.1
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 7.0e-285 983.4 546 89.7
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 3.3e-279 964.5 544 88.8
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.7e-278 962.2 544 88.6
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.6e-276 955.7 544 88.8
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.5e-275 950.3 560 85.7
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.5e-274 948.3 555 86.3
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 1.2e-273 946.0 545 85.9
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 1.5e-271 939.1 560 83.6
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 7.5e-271 936.8 545 85.1
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 4.1e-269 931.0 543 84.2
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 5.0e-267 924.1 545 83.9
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 6.6e-267 923.7 541 84.1
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.1e-266 922.9 545 83.7
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 9.5e-266 919.8 544 83.8
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 9.5e-266 919.8 545 83.5
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 8.0e-265 916.8 529 84.3
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 5.2e-264 914.1 543 82.3
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 8.9e-264 913.3 543 82.9
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 1.3e-262 909.4 545 82.9
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 1.3e-262 909.4 543 82.0
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 3.7e-262 907.9 543 82.3
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 3.7e-262 907.9 540 83.9
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.1e-261 906.4 543 82.5
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 2.4e-261 905.2 543 82.0
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 5.9e-260 900.6 544 83.1
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.9e-259 897.9 544 81.4
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.5e-258 896.0 541 80.4
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 3.3e-258 894.8 543 81.4
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 2.1e-257 892.1 543 81.4
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 2.1e-257 892.1 517 84.3
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 8.0e-257 890.2 516 84.1
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 1.0e-256 889.8 543 81.0
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 2.3e-256 888.6 518 84.0
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 5.2e-256 887.5 544 79.2
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 5.2e-256 887.5 543 79.9
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 6.8e-256 887.1 543 81.2
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 2.4e-253 878.6 543 79.7
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 3.2e-253 878.2 483 88.6
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 7.0e-253 877.1 522 82.2
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 1.0e-251 873.2 527 80.3
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.3e-251 872.8 543 78.5
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 1.2e-249 866.3 543 79.7
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.2e-249 866.3 543 79.6
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 1.4e-248 862.8 526 79.7
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 5.8e-247 857.4 521 80.6
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 2.9e-246 855.1 521 80.8
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 4.9e-246 854.4 469 89.3
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.1e-245 853.2 547 77.5
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 1.9e-245 852.4 522 80.1
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 2.4e-245 852.0 521 79.8
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.4e-245 852.0 472 88.3
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 2.4e-245 852.0 516 79.1
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 4.1e-245 851.3 518 79.9
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 1.2e-244 849.7 542 77.9
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 2.1e-244 849.0 521 79.7
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 2.3e-243 845.5 517 79.5
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 2.3e-243 845.5 528 78.2
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 1.5e-242 842.8 524 77.9
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.5e-242 842.8 517 78.9
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 2.5e-242 842.0 517 79.5
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 5.6e-242 840.9 470 87.9
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 7.3e-242 840.5 524 77.7
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 1.6e-241 839.3 524 77.5
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 2.1e-241 839.0 517 79.9
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 8.1e-241 837.0 521 78.1
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.8e-240 835.9 523 77.2
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 2.3e-240 835.5 517 79.1
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 3.1e-240 835.1 517 78.9
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 1.5e-239 832.8 525 77.3
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.5e-239 832.8 517 77.9
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 2.0e-239 832.4 543 75.9
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 2.6e-239 832.0 517 78.7
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 1.3e-238 829.7 520 76.7
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 1.7e-238 829.3 515 77.9
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.7e-238 829.3 523 78.0
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 4.9e-238 827.8 488 82.2
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.9e-237 825.9 519 78.2
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 2.7e-236 822.0 525 76.4
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.5e-234 815.5 469 84.6
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 9.5e-234 813.5 467 85.7
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.4e-232 809.7 526 75.5
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 8.9e-232 807.0 544 73.2
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 3.8e-230 801.6 518 77.4
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.0e-227 793.5 470 80.9
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 1.0e-227 793.5 544 73.9
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 1.3e-227 793.1 517 75.6
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 5.1e-227 791.2 470 82.1
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 5.1e-227 791.2 472 83.7
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 6.6e-227 790.8 521 75.4
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 2.2e-222 775.8 469 79.1
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 6.4e-222 774.2 469 81.0
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.9e-218 762.7 473 77.6
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 7.1e-213 744.2 528 70.6
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 8.7e-211 737.3 543 68.1
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 2.1e-209 732.6 454 79.5
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 1.0e-206 723.8 536 64.2
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 1.6e-204 716.5 533 65.1
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 2.3e-203 712.6 515 67.8
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 3.9e-203 711.8 542 63.3
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 5.3e-200 701.4 516 68.8
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.5e-199 699.9 527 63.2
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 3.3e-194 682.2 523 68.3
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 4.1e-192 675.2 523 66.9
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 1.4e-189 666.8 470 68.9
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 3.9e-171 605.5 516 57.4
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.7e-169 599.0 437 70.9
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 3.6e-164 582.4 548 55.1
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.9e-136 490.3 289 82.4
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 9.5e-133 478.0 408 61.3
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.0e-118 431.4 263 81.0
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.9e-113 412.5 330 64.2
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 7.1e-104 382.1 254 74.0
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 4.6e-95 352.8 215 77.2
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 5.8e-90 335.9 185 85.9
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.7e-87 327.0 252 64.7
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.0e-86 325.1 339 51.3
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.4e-80 304.7 471 41.4
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 3.8e-65 253.4 155 76.1
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 8.0e-47 192.6 135 69.6
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 2.1e-39 167.9 454 30.0
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 9.8e-29 132.5 77 80.5
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 3.7e-20 104.0 65 78.5
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 4.9e-20 103.6 68 75.0
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.1e-10 71.6 49 73.5
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 8.6e-09 66.2 50 66.0
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.6e-07 62.0 48 62.5


User provided reference genes

Program Settings