Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G213400 Prunus persica HOM05D006004 ORTHO05D006976 6.3e-65 251.1 181 100.0
Prupe.5G213600 Prunus persica HOM05D006004 ORTHO05D006976 1.9e-24 116.7 67 92.5
MD14G1219000 Malus domestica HOM05D006004 ORTHO05D006976 1.5e-21 107.1 67 82.1
RcHm_v2.0_Chr7g0184231 Rosa chinensis HOM05D006004 ORTHO05D006976 5.6e-21 105.1 66 77.3
FvH4_5g12950 Fragaria vesca HOM05D006004 ORTHO05D006976 1.6e-20 103.6 66 75.8
FAN08G1008 Fragaria x ananassa HOM05D006004 ORTHO05D006976 1.6e-20 103.6 66 75.8
FAN13G2114 Fragaria x ananassa HOM05D006004 ORTHO05D006976 1.6e-20 103.6 66 75.8
MD06G1208600 Malus domestica HOM05D006004 ORTHO05D006976 1.6e-20 103.6 62 87.1
Dinv38608 Davidia involucrata HOM05D006004 ORTHO05D006976 3.6e-20 102.4 66 80.3
FAN18G2003 Fragaria x ananassa HOM05D006004 ORTHO05D006976 4.7e-20 102.1 66 74.2
FAN18G3302 Fragaria x ananassa HOM05D006004 ORTHO05D006976 4.7e-20 102.1 66 74.2
Hma1.2p1_0340F.1_g130130 Hydrangea macrophylla HOM05D006004 ORTHO05D006976 8.1e-20 101.3 66 80.3
Ciclev10018681m.g Citrus clementina HOM05D000011 ORTHO05D006976 1.8e-19 100.1 74 71.6
Dinv36862 Davidia involucrata HOM05D006004 ORTHO05D006976 1.8e-19 100.1 66 78.8
Cfa019848 Carpinus fangiana HOM05D000764 ORTHO05D002006 2.3e-19 99.8 66 78.8
Ca_21732_v3 Cicer arietinum L. HOM05D006004 ORTHO05D006976 2.3e-19 99.8 67 77.6
QL10p022090 Quercus lobata HOM05D006004 ORTHO05D006976 5.2e-19 98.6 66 77.3
Lalb_Chr07g0178481 Lupinus albus HOM05D006004 ORTHO05D006976 8.9e-19 97.8 66 75.8
Haze_18564 Corylus avellana HOM05D006004 ORTHO05D006976 2.6e-18 96.3 66 75.8
Medtr4g112530 Medicago truncatula HOM05D006004 ORTHO05D006976 3.4e-18 95.9 66 74.2
Rhsim12G0145700 Rhododendron simsii HOM05D006004 ORTHO05D006976 3.4e-18 95.9 66 75.8
PSO782G5175 Papaver somniferum HOM05D006004 ORTHO05D006976 4.4e-18 95.5 66 74.2
Psat4g044640 Pisum sativum HOM05D006004 ORTHO05D006976 4.4e-18 95.5 66 74.2
VMungo1215G0559 Vigna mungo HOM05D006004 ORTHO05D006976 4.4e-18 95.5 66 74.2
arahy.Tifrunner.gnm1.ann1.4WKV82 Arachis hypogaea HOM05D006004 ORTHO05D006976 5.8e-18 95.1 66 72.7
arahy.Tifrunner.gnm1.ann1.N2LMFJ Arachis hypogaea HOM05D006004 ORTHO05D006976 5.8e-18 95.1 66 72.7
Lalb_Chr13g0302541 Lupinus albus HOM05D006004 ORTHO05D006976 5.8e-18 95.1 66 74.2
Glyma.17G084300 Glycine max HOM05D006004 ORTHO05D006976 7.5e-18 94.7 66 74.2
Manes.05G116700 Manihot esculenta HOM05D006004 ORTHO05D006976 7.5e-18 94.7 66 72.7
CiPaw.15G122500 Carya illinoinensis HOM05D006004 ORTHO05D006976 9.9e-18 94.4 66 72.7
Thecc.03G091900 Theobroma cacao HOM05D006004 ORTHO05D006976 1.3e-17 94.0 66 71.2
Thecc.03G114100 Theobroma cacao HOM05D006004 ORTHO05D006976 1.3e-17 94.0 66 71.2
GSVIVG01008201001 Vitis vinifera HOM05D006004 ORTHO05D006976 1.3e-17 94.0 66 71.2
Atru.chr9.693 Acer truncatum HOM05D006004 ORTHO05D006976 1.7e-17 93.6 66 74.2
Manes.01G022600 Manihot esculenta HOM05D006004 ORTHO05D006976 2.2e-17 93.2 66 74.2
Eucgr.K02642 Eucalyptus grandis HOM05D006004 ORTHO05D006976 3.7e-17 92.4 66 69.7
Actinidia35066 Actinidia chinensis HOM05D006004 ORTHO05D006976 6.4e-17 91.7 66 71.2
Phvul.003G180100 Phaseolus vulgaris HOM05D006004 ORTHO05D006976 6.4e-17 91.7 66 69.7
COL.COLO4_32170 Corchorus olitorius HOM05D006004 ORTHO05D006976 8.3e-17 91.3 66 69.7
Duzib068G1132 Durio zibethinus HOM05D006004 ORTHO05D006976 8.3e-17 91.3 66 68.2
PSO063G5123 Papaver somniferum HOM05D006004 ORTHO05D006976 1.4e-16 90.5 66 71.2
Potri.015G052200 Populus trichocarpa HOM05D006004 ORTHO05D006976 1.4e-16 90.5 66 69.7
Lsat_1_v5_gn_4_111701 Lactuca sativa HOM05D006004 ORTHO05D006976 1.9e-16 90.1 66 74.2
PGR044G2256 Punica granatum HOM05D006004 ORTHO05D006976 1.9e-16 90.1 66 68.2
Sabra15G0076000 Salix brachista HOM05D006004 ORTHO05D006976 1.9e-16 90.1 66 68.2
Aqoxy3G03831 Aquilegia oxysepala HOM05D006004 ORTHO05D006976 3.2e-16 89.4 66 68.2
Cpa.g.sc13.84 Carica papaya HOM05D000764 ORTHO05D002006 4.1e-16 89.0 66 72.7
Nitab4.5_0004342g0050 Nicotiana tabacum HOM05D006004 ORTHO05D006976 4.1e-16 89.0 66 71.2
vmacro16462 Vaccinium macrocarpon HOM05D006004 ORTHO05D006976 4.1e-16 89.0 66 68.2
AL6G34230 Arabidopsis lyrata HOM05D006004 ORTHO05D006976 5.4e-16 88.6 66 69.7
MSTRG.9575 Avicennia marina HOM05D006004 ORTHO05D006976 7.1e-16 88.2 66 68.2
Gohir.A07G057100 Gossypium hirsutum HOM05D006004 ORTHO05D006976 7.1e-16 88.2 66 66.7
Oeu031928.2 Olea europaea HOM05D006004 ORTHO05D006976 7.1e-16 88.2 66 68.2
Cc04_g07800 Coffea canephora HOM05D006004 ORTHO05D006976 9.2e-16 87.8 66 66.7
Glyma.05G016000 Glycine max HOM05D006004 ORTHO05D006976 9.2e-16 87.8 66 71.2
Gorai.001G065100 Gossypium raimondii HOM05D006004 ORTHO05D006976 1.2e-15 87.4 66 66.7
SalBow1G1782 Salvia bowleyana HOM05D006004 ORTHO05D006976 1.2e-15 87.4 66 68.2
Thhalv10004373m.g Eutrema salsugineum HOM05D006004 ORTHO05D006976 1.6e-15 87.0 66 66.7
Nitab4.5_0000646g0210 Nicotiana tabacum HOM05D006004 ORTHO05D006976 1.6e-15 87.0 66 68.2
Sp2g24060 Schrenkiella parvula HOM05D006004 ORTHO05D006976 1.6e-15 87.0 66 68.2
PGSC0003DMG400024508 Solanum tuberosum HOM05D006004 ORTHO05D006976 1.6e-15 87.0 66 71.2
DCAR_015123 Daucus carota HOM05D006004 ORTHO05D006976 2.1e-15 86.7 66 68.2
Carub.0006s2084 Capsella rubella HOM05D006004 ORTHO05D006976 2.7e-15 86.3 66 66.7
CAN.G982.4 Capsicum annuum HOM05D006004 ORTHO05D006976 2.7e-15 86.3 66 69.7
Migut.D01490 Erythranthe guttata HOM05D006004 ORTHO05D006976 2.7e-15 86.3 66 66.7
Actinidia18955 Actinidia chinensis HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 66.7
BcaC06g33190 Brassica carinata HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 63.6
BcaNung02628 Brassica carinata HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 63.6
A03p46450 Brassica napus HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 63.6
C07p44490 Brassica napus HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 63.6
BolC7t44968H Brassica oleracea HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 63.6
BraA03t13771Z Brassica rapa HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 63.6
CANSAT80G2410 Cannabis sativa HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 65.2
Gohir.D07G061400 Gossypium hirsutum HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 65.2
THA.LOC104800943 Tarenaya hassleriana HOM05D006004 ORTHO05D006976 3.5e-15 85.9 66 68.2
CARHR190470 Cardamine hirsuta HOM05D006004 ORTHO05D006976 4.6e-15 85.5 66 71.2
TAR633G2114 Trochodendron aralioides HOM05D006004 ORTHO05D006976 6.0e-15 85.1 66 71.2
ECA232G0726 Erigeron canadensis HOM05D006004 ORTHO05D006976 7.8e-15 84.7 66 66.7
Solyc03g114450.3 Solanum lycopersicum HOM05D006004 ORTHO05D006976 7.8e-15 84.7 66 68.2
Sopen03g033550 Solanum pennellii HOM05D006004 ORTHO05D006976 7.8e-15 84.7 66 68.2
TPR.G2782 Trifolium pratense HOM05D006004 ORTHO05D006976 7.8e-15 84.7 66 65.2
BcaC09g49695 Brassica carinata HOM05D006004 ORTHO05D006976 1.0e-14 84.3 66 62.1
C01p33840 Brassica napus HOM05D006004 ORTHO05D006976 1.0e-14 84.3 66 62.1
BolC1t03349H Brassica oleracea HOM05D006004 ORTHO05D006976 1.0e-14 84.3 66 62.1
HanXRQChr16g0502021 Helianthus annuus HOM05D006004 ORTHO05D006976 3.0e-14 82.8 66 65.2
unitig_8.g3285 Utricularia gibba HOM05D000076 ORTHO05D006976 3.0e-14 82.8 66 63.6
Lj9A434T79 Lonicera japonica HOM05D006004 ORTHO05D006976 3.9e-14 82.4 62 67.7
Hund02533 Selenicereus undatus HOM05D006004 ORTHO05D006976 3.9e-14 82.4 70 61.4
Sed0014753 Sechium edule HOM05D006004 ORTHO05D006976 5.1e-14 82.0 66 65.2
AT5G23060 Arabidopsis thaliana HOM05D006004 ORTHO05D006976 6.6e-14 81.6 66 65.2
ClCG04G011410 Citrullus lanatus HOM05D006004 ORTHO05D006976 6.6e-14 81.6 66 65.2
MELO3C002063.2 Cucumis melo HOM05D006004 ORTHO05D006976 6.6e-14 81.6 66 65.2
CsaV3_1G006370 Cucumis sativus L. HOM05D006004 ORTHO05D006976 8.6e-14 81.3 66 65.2
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 1.1e-13 80.9 89 52.8
Sc04g0003860 Simmondsia chinensis HOM05D006004 ORTHO05D006976 1.1e-13 80.9 66 60.6
Aa31LG11G2560 Aethionema arabicum HOM05D006004 ORTHO05D006976 1.9e-13 80.1 66 62.1
Lj4g0027030 Lotus japonicus HOM05D006004 ORTHO05D006976 7.3e-13 78.2 56 71.4
CDE02G3844 Ceratophyllum demersum HOM05D006004 ORTHO05D006976 3.6e-12 75.9 66 60.6
Os02g0729400 Oryza sativa ssp. japonica HOM05D006004 ORTHO05D006976 3.6e-12 75.9 69 65.2
CDE01G0597 Ceratophyllum demersum HOM05D006004 ORTHO05D006976 1.4e-11 73.9 66 59.1
MBI14_g38619_MAGBIO Magnolia biondii HOM05D006004 ORTHO05D006976 1.4e-11 73.9 59 59.3
Peaxi162Scf00017g03030 Petunia axillaris HOM05D006004 ORTHO05D006976 1.8e-11 73.6 55 70.9
ATR0752G115 Amborella trichopoda HOM05D006004 ORTHO05D006976 3.1e-11 72.8 65 58.5
TAR622G0980 Trochodendron aralioides HOM05D006004 ORTHO05D006976 8.9e-11 71.2 53 73.6
TWI81G0634 Tripterygium wilfordii HOM05D006004 ORTHO05D006976 1.5e-10 70.5 66 59.1
HPP92_019401 Vanilla planifolia HOM05D006004 ORTHO05D006976 2.0e-10 70.1 66 53.0
SGA_v2.0_scaffold171G38896 Striga asiatica HOM05D006004 ORTHO05D006976 2.2e-09 66.6 66 56.1
SEGI_01456 Sequoiadendron giganteum HOM05D006004 ORTHO05D006976 3.8e-09 65.9 73 54.8
Zm00001eb189890 Zea mays HOM05D006004 ORTHO05D006976 6.4e-09 65.1 61 55.7
Pp3c14_1540 Physcomitrium patens HOM05D006004 ORTHO05D006976 1.4e-08 63.9 88 43.2
AUR62036924 Chenopodium quinoa HOM05D006004 ORTHO05D006976 3.2e-08 62.8 55 54.5
AUR62032166 Chenopodium quinoa HOM05D006004 ORTHO05D006976 4.2e-08 62.4 54 55.6
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 5.4e-08 62.0 48 60.4
EL10Ac5g11222 Beta vulgaris HOM05D006004 ORTHO05D006976 5.4e-08 62.0 57 56.1
TAR374G1242 Trochodendron aralioides HOM05D006004 ORTHO05D006976 1.2e-07 60.8 40 75.0
Aqoxy3G00419 Aquilegia oxysepala HOM05D006004 ORTHO05D006976 2.7e-07 59.7 66 45.5


User provided reference genes

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