Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 4.2e-202 708.0 403 100.0
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.9e-139 498.8 389 77.1
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 2.5e-138 496.1 383 72.3
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.1e-136 490.7 378 77.2
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 5.2e-128 461.8 402 72.4
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 1.9e-125 453.4 402 68.9
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.1e-121 439.9 379 72.0
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 1.3e-118 430.6 402 67.7
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 1.4e-117 427.2 337 76.9
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 2.1e-116 423.3 407 60.2
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 4.6e-116 422.2 401 65.3
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 8.7e-115 417.9 403 66.0
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 1.5e-114 417.2 403 64.8
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 2.4e-112 409.8 402 63.4
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 1.2e-111 407.5 400 59.5
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 1.9e-109 400.2 382 62.0
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 1.1e-104 384.4 384 63.3
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 2.4e-104 383.3 403 60.3
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 2.4e-104 383.3 402 58.2
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 1.1e-101 374.4 383 61.6
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 9.3e-101 371.3 382 57.3
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 2.7e-100 369.8 390 55.6
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 1.5e-98 364.0 407 58.7
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 9.6e-98 361.3 322 70.5
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 2.8e-97 359.8 408 57.4
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 9.0e-96 354.8 403 57.8
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 2.0e-95 353.6 402 59.0
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 1.4e-93 347.4 388 51.8
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 1.4e-93 347.4 411 52.6
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 2.7e-92 343.2 384 53.9
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 1.0e-91 341.3 398 57.3
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 3.9e-91 339.3 396 56.3
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 1.9e-90 337.0 392 58.2
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 3.7e-89 332.8 397 56.7
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 3.7e-89 332.8 386 52.1
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 3.7e-89 332.8 400 55.0
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 4.8e-89 332.4 402 56.5
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 8.2e-89 331.6 406 52.2
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 4.1e-88 329.3 363 54.8
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 8.5e-86 321.6 358 58.9
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 1.9e-85 320.5 412 47.3
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 5.5e-85 318.9 396 48.5
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 1.3e-83 314.3 311 65.3
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 5.1e-83 312.4 385 51.4
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 1.5e-82 310.8 400 50.2
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 1.9e-82 310.5 385 50.9
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 2.5e-82 310.1 431 45.0
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 5.3e-80 302.4 385 50.9
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 9.1e-80 301.6 389 47.6
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 1.2e-79 301.2 391 46.5
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 1.2e-79 301.2 403 50.6
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 2.0e-79 300.4 355 51.0
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 7.7e-79 298.5 381 48.3
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 1.3e-78 297.7 402 48.3
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 2.9e-78 296.6 396 46.5
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 2.9e-78 296.6 428 46.7
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 1.4e-77 294.3 355 51.5
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 1.9e-77 293.9 403 50.4
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 7.2e-77 292.0 330 52.4
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 7.2e-77 292.0 377 54.4
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 9.4e-77 291.6 390 51.0
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 1.2e-76 291.2 411 45.0
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 1.6e-76 290.8 280 59.3
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 2.7e-76 290.0 385 47.3
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 3.6e-76 289.7 395 51.1
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 3.6e-76 289.7 385 45.7
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 3.0e-75 286.6 402 46.0
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 2.0e-74 283.9 395 51.6
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 2.6e-74 283.5 384 50.8
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 3.3e-74 283.1 393 48.3
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 7.4e-74 282.0 338 52.1
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 4.8e-73 279.3 387 49.6
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 6.3e-73 278.9 371 50.9
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 2.4e-72 276.9 384 47.9
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 3.1e-72 276.6 400 46.8
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 4.1e-72 276.2 388 46.9
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 4.1e-72 276.2 408 46.3
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 1.2e-71 274.6 370 49.7
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.0e-71 273.9 376 45.7
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 2.6e-71 273.5 383 46.0
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 7.7e-71 271.9 386 49.5
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 1.3e-70 271.2 321 52.3
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 2.1e-68 263.8 362 45.6
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 1.0e-67 261.5 383 44.1
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 1.0e-67 261.5 383 44.1
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 2.3e-67 260.4 379 44.9
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 3.9e-67 259.6 384 47.4
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 6.7e-67 258.8 406 46.6
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 8.8e-67 258.5 383 47.3
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 2.0e-66 257.3 326 49.7
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 3.1e-64 250.0 350 52.3
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 3.5e-63 246.5 391 48.8
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 1.7e-62 244.2 313 49.8
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 5.0e-62 242.7 401 47.4
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 4.2e-61 239.6 384 43.2
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 7.2e-61 238.8 377 43.5
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 3.6e-60 236.5 403 46.9
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 1.1e-48 198.4 392 42.6
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 1.4e-48 198.0 363 39.1
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 3.5e-47 193.4 401 36.4
EL10Ac5g11100 Beta vulgaris HOM05D006409 ORTHO05D008250 2.3e-46 190.7 390 42.1
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 1.8e-43 181.0 356 36.8
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 4.0e-43 179.9 368 40.5
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 2.2e-41 174.1 391 37.3
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 1.1e-40 171.8 280 43.6
Duzib068G0538 Durio zibethinus HOM05D006409 ORTHO05D008250 5.4e-40 169.5 212 50.0
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 5.9e-39 166.0 299 40.1
SEGI_28191 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 2.0e-34 151.0 404 33.9
SEGI_37085 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 2.0e-34 151.0 404 33.9
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 6.4e-33 146.0 302 39.1
Lsat_1_v5_gn_4_110201 Lactuca sativa HOM05D006409 ORTHO05D008250 2.7e-31 140.6 400 33.5
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 2.6e-26 124.0 232 38.8
SGA_v2.0_scaffold25G10967 Striga asiatica HOM05D006409 ORTHO05D008250 3.1e-19 100.5 327 32.1
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 3.3e-13 80.5 96 47.9
arahy.Tifrunner.gnm1.ann1.LPT8KM Arachis hypogaea HOM05D006409 ORTHO05D008250 1.4e-11 75.1 73 57.5
Glyma.01G017150 Glycine max HOM05D006409 ORTHO05D008250 2.4e-11 74.3 108 40.7
Actinidia12838 Actinidia chinensis HOM05D006409 ORTHO05D008250 6.8e-11 72.8 87 49.4
AagrBONN_evm.TU.Sc2ySwM_344.1629 Anthoceros agrestis HOM05D006409 ORTHO05D008250 8.4e-09 65.9 269 27.9
C04p51600 Brassica napus HOM05D006409 ORTHO05D008250 1.6e-07 61.6 83 47.0


User provided reference genes

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