Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G197700 Prunus persica HOM05D001764 ORTHO05D001946 1.2e-135 486.5 238 100.0
Prupe.5G197500 Prunus persica HOM05D001764 ORTHO05D001946 2.2e-86 322.8 269 65.8
MD06G1197200 Malus domestica HOM05D001764 ORTHO05D001946 1.7e-78 296.6 277 61.0
MD14G1204400 Malus domestica HOM05D001764 ORTHO05D001946 1.6e-76 290.0 278 58.6
MD14G1204300 Malus domestica HOM05D001764 ORTHO05D001946 4.0e-75 285.4 278 58.3
FvH4_5g14590 Fragaria vesca HOM05D001764 ORTHO05D001946 6.6e-70 268.1 284 53.9
FAN18G3859 Fragaria x ananassa HOM05D001764 ORTHO05D001946 6.6e-70 268.1 284 53.9
RcHm_v2.0_Chr7g0181981 Rosa chinensis HOM05D001764 ORTHO05D001946 1.1e-69 267.3 285 53.7
RcHm_v2.0_Chr7g0181951 Rosa chinensis HOM05D001764 ORTHO05D001946 2.1e-68 263.1 284 53.5
Lalb_Chr13g0303091 Lupinus albus HOM05D001764 ORTHO05D001946 5.4e-64 248.4 204 60.3
Glyma.05G025100 Glycine max HOM05D001764 ORTHO05D001946 1.3e-62 243.8 204 60.8
QL10p017630 Quercus lobata HOM05D001764 ORTHO05D001946 1.3e-62 243.8 270 53.3
TAR374G0441 Trochodendron aralioides HOM05D001764 ORTHO05D001946 2.9e-62 242.7 260 49.6
COL.COLO4_36937 Corchorus olitorius HOM05D001764 ORTHO05D001946 5.0e-62 241.9 241 53.1
Thecc.03G093600 Theobroma cacao HOM05D001764 ORTHO05D001946 5.0e-62 241.9 248 53.2
Dinv10651 Davidia involucrata HOM05D001764 ORTHO05D001946 6.6e-62 241.5 281 49.5
Duzib205G0803 Durio zibethinus HOM05D001764 ORTHO05D001946 7.3e-61 238.0 269 49.8
CANSAT78G1062 Cannabis sativa HOM05D001764 ORTHO05D001946 9.5e-61 237.7 266 49.6
TWI81G0186 Tripterygium wilfordii HOM05D001764 ORTHO05D001946 9.5e-61 237.7 252 50.4
CiPaw.11G047000 Carya illinoinensis HOM05D001764 ORTHO05D001946 1.2e-60 237.3 195 63.6
PSO478G1026 Papaver somniferum HOM05D001764 ORTHO05D001946 2.8e-60 236.1 195 61.5
TPR.G9268 Trifolium pratense HOM05D001764 ORTHO05D001946 6.1e-60 235.0 275 47.6
arahy.Tifrunner.gnm1.ann1.YU35ML Arachis hypogaea HOM05D001764 ORTHO05D001946 1.0e-59 234.2 189 61.9
CiPaw.12G011800 Carya illinoinensis HOM05D001764 ORTHO05D001946 1.0e-59 234.2 195 61.0
Cfa018913 Carpinus fangiana HOM05D001764 ORTHO05D001946 2.3e-59 233.0 197 61.9
arahy.Tifrunner.gnm1.ann1.W39VMW Arachis hypogaea HOM05D001764 ORTHO05D001946 3.1e-59 232.6 189 61.4
Psat4g049880 Pisum sativum HOM05D001764 ORTHO05D001946 3.1e-59 232.6 267 47.9
Glyma.17G102100 Glycine max HOM05D001764 ORTHO05D001946 5.2e-59 231.9 204 57.4
Lj4g0015220 Lotus japonicus HOM05D001764 ORTHO05D001946 3.4e-58 229.2 198 58.1
Nn4g23270 Nelumbo nucifera HOM05D001764 ORTHO05D001946 4.4e-58 228.8 194 59.8
Sabra15G0087000 Salix brachista HOM05D001764 ORTHO05D001946 4.4e-58 228.8 211 54.5
TPR.G35116 Trifolium pratense HOM05D001764 ORTHO05D001946 4.4e-58 228.8 272 47.4
Medtr4g108870 Medicago truncatula HOM05D001764 ORTHO05D001946 5.8e-58 228.4 198 59.1
Phvul.003G188500 Phaseolus vulgaris HOM05D001764 ORTHO05D001946 5.8e-58 228.4 190 60.5
Cc04_g15180 Coffea canephora HOM05D001764 ORTHO05D001946 2.2e-57 226.5 260 47.3
Nn3g17322 Nelumbo nucifera HOM05D001764 ORTHO05D001946 4.9e-57 225.3 194 57.2
VMungo1215G2955 Vigna mungo HOM05D001764 ORTHO05D001946 8.3e-57 224.6 210 55.2
Ciclev10019755m.g Citrus clementina HOM05D001764 ORTHO05D001946 1.4e-56 223.8 245 50.6
Atru.chr9.148 Acer truncatum HOM05D001764 ORTHO05D001946 2.4e-56 223.0 271 47.6
Lalb_Chr07g0178161 Lupinus albus HOM05D001764 ORTHO05D001946 3.2e-56 222.6 224 52.2
Actinidia37612 Actinidia chinensis HOM05D001764 ORTHO05D001946 4.1e-56 222.2 269 46.8
Ca_21809_v3 Cicer arietinum L. HOM05D001764 ORTHO05D001946 4.1e-56 222.2 209 54.1
Duzib068G0120 Durio zibethinus HOM05D001764 ORTHO05D001946 5.4e-56 221.9 242 51.2
Sed0016998 Sechium edule HOM05D001764 ORTHO05D001946 5.4e-56 221.9 227 50.2
MD14G1204200 Malus domestica HOM05D001764 ORTHO05D001946 1.2e-55 220.7 283 48.1
Eucgr.B00534 Eucalyptus grandis HOM05D001764 ORTHO05D001946 4.6e-55 218.8 194 57.2
Nitab4.5_0005900g0080 Nicotiana tabacum HOM05D001764 ORTHO05D001946 3.0e-54 216.1 194 56.7
TWI60G1593 Tripterygium wilfordii HOM05D001764 ORTHO05D001946 3.9e-54 215.7 194 55.2
Nitab4.5_0001211g0270 Nicotiana tabacum HOM05D001764 ORTHO05D001946 5.0e-54 215.3 291 43.3
Cpa.g.sc111.56 Carica papaya HOM05D001764 ORTHO05D001946 6.6e-54 214.9 253 49.0
Gohir.A12G179400 Gossypium hirsutum HOM05D001764 ORTHO05D001946 6.6e-54 214.9 238 49.6
Manes.06G090000 Manihot esculenta HOM05D001764 ORTHO05D001946 6.6e-54 214.9 260 45.0
MELO3C017188.2 Cucumis melo HOM05D001764 ORTHO05D001946 8.6e-54 214.5 192 55.7
EL10Ac5g11062 Beta vulgaris HOM05D001764 ORTHO05D001946 1.5e-53 213.8 195 54.9
CsaV3_1G002520 Cucumis sativus L. HOM05D001764 ORTHO05D001946 1.5e-53 213.8 242 48.8
TPR.G39785 Trifolium pratense HOM05D001764 ORTHO05D001946 2.5e-53 213.0 275 43.6
CAN.G479.64 Capsicum annuum HOM05D001764 ORTHO05D001946 3.3e-53 212.6 193 54.9
Peaxi162Scf00274g00352 Petunia axillaris HOM05D001764 ORTHO05D001946 3.3e-53 212.6 194 54.6
FAN13G3320 Fragaria x ananassa HOM05D001764 ORTHO05D003857 5.6e-53 211.8 258 49.6
Potri.015G062000 Populus trichocarpa HOM05D001764 ORTHO05D001946 5.6e-53 211.8 287 44.3
QL10p017615 Quercus lobata HOM05D001764 ORTHO05D001946 5.6e-53 211.8 261 50.6
Sopen03g034760 Solanum pennellii HOM05D001764 ORTHO05D001946 5.6e-53 211.8 194 55.2
Solyc03g115780.2 Solanum lycopersicum HOM05D001764 ORTHO05D001946 9.5e-53 211.1 194 54.1
MBI02_g14225_MAGBIO Magnolia biondii HOM05D001764 ORTHO05D001946 1.2e-52 210.7 195 55.9
ClCG06G016030 Citrullus lanatus HOM05D001764 ORTHO05D001946 2.8e-52 209.5 191 55.5
Thhalv10013435m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 2.8e-52 209.5 240 49.2
Gorai.008G195300 Gossypium raimondii HOM05D001764 ORTHO05D001946 2.8e-52 209.5 238 48.7
Ciclev10019899m.g Citrus clementina HOM05D001764 ORTHO05D001946 4.7e-52 208.8 280 46.1
Manes.14G081400 Manihot esculenta HOM05D001764 ORTHO05D001946 4.7e-52 208.8 258 45.3
Oeu052451.1 Olea europaea HOM05D001764 ORTHO05D001946 4.7e-52 208.8 194 56.7
AUR62021642 Chenopodium quinoa HOM05D001764 ORTHO05D001946 8.0e-52 208.0 218 50.0
Lsat_1_v5_gn_5_21501 Lactuca sativa HOM05D001764 ORTHO05D001946 8.0e-52 208.0 288 44.1
DCAR_016575 Daucus carota HOM05D001764 ORTHO05D001946 1.1e-51 207.6 268 43.3
Lj5A108T59 Lonicera japonica HOM05D001764 ORTHO05D001946 1.1e-51 207.6 199 54.8
HanXRQChr08g0236671 Helianthus annuus HOM05D001764 ORTHO05D001946 1.8e-51 206.8 235 48.9
Gohir.D12G182000 Gossypium hirsutum HOM05D001764 ORTHO05D001946 2.3e-51 206.5 238 48.3
BcaC06g32411 Brassica carinata HOM05D001764 ORTHO05D001946 3.1e-51 206.1 223 50.7
C09p69790 Brassica napus HOM05D001764 ORTHO05D001946 3.1e-51 206.1 223 50.7
BolC9t59723H Brassica oleracea HOM05D001764 ORTHO05D001946 3.1e-51 206.1 223 50.7
AUR62008448 Chenopodium quinoa HOM05D001764 ORTHO05D001946 3.1e-51 206.1 195 53.8
CSS0015633 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 6.8e-51 204.9 200 51.5
TAR217G0004 Trochodendron aralioides HOM05D001764 ORTHO05D001946 8.9e-51 204.5 243 49.0
Aqoxy3G00479 Aquilegia oxysepala HOM05D001764 ORTHO05D001946 1.5e-50 203.8 194 55.2
Lj5A108T58 Lonicera japonica HOM05D001764 ORTHO05D001946 1.5e-50 203.8 227 49.3
Lj9A466T76 Lonicera japonica HOM05D001764 ORTHO05D001946 1.5e-50 203.8 264 44.3
Sabra15G0087100 Salix brachista HOM05D001764 ORTHO05D001946 2.0e-50 203.4 194 53.1
Sc04g0002830 Simmondsia chinensis HOM05D001764 ORTHO05D001946 2.0e-50 203.4 230 48.3
TAR371G1169 Trochodendron aralioides HOM05D001764 ORTHO05D001946 2.6e-50 203.0 243 49.4
Gohir.A11G031900 Gossypium hirsutum HOM05D001764 ORTHO05D001946 3.4e-50 202.6 251 46.6
A10p29410 Brassica napus HOM05D001764 ORTHO05D001946 7.5e-50 201.4 255 45.9
vmacro17569 Vaccinium macrocarpon HOM05D001764 ORTHO05D001946 9.8e-50 201.1 277 43.3
Rhsim08G0152300 Rhododendron simsii HOM05D001764 ORTHO05D001946 1.3e-49 200.7 256 44.9
QL93p0356_0066 Quercus lobata HOM05D001764 ORTHO05D001946 1.7e-49 200.3 264 47.3
BraA10t44985Z Brassica rapa HOM05D001764 ORTHO05D001946 8.3e-49 198.0 256 45.3
ECA246G0801 Erigeron canadensis HOM05D001764 ORTHO05D001946 8.3e-49 198.0 199 53.8
Aa31LG3G18730 Aethionema arabicum HOM05D001764 ORTHO05D001946 1.1e-48 197.6 287 42.5
Hund02627 Selenicereus undatus HOM05D001764 ORTHO05D001946 1.4e-48 197.2 218 48.6
TAR217G0003 Trochodendron aralioides HOM05D001764 ORTHO05D001946 1.4e-48 197.2 240 48.8
BcaC06g32500 Brassica carinata HOM05D001764 ORTHO05D001946 2.4e-48 196.4 220 49.5
Peaxi162Scf00106g00421 Petunia axillaris HOM05D001764 ORTHO05D001946 3.2e-48 196.1 194 52.6
AL6G18080 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 4.1e-48 195.7 257 45.9
HanXRQChr05g0155001 Helianthus annuus HOM05D001764 ORTHO05D001946 7.0e-48 194.9 194 53.1
SGA_v2.0_scaffold313G48336 Striga asiatica HOM05D001764 ORTHO05D001946 7.0e-48 194.9 188 55.3
THA.LOC104818322 Tarenaya hassleriana HOM05D001764 ORTHO05D001946 7.0e-48 194.9 272 42.3
Sp6g35190 Schrenkiella parvula HOM05D001764 ORTHO05D001946 9.2e-48 194.5 262 43.9
Aa31LG11G2030 Aethionema arabicum HOM05D001764 ORTHO05D001946 2.1e-47 193.4 259 45.2
Migut.I00208 Erythranthe guttata HOM05D001764 ORTHO05D001946 2.1e-47 193.4 265 44.2
MSTRG.23004 Avicennia marina HOM05D001764 ORTHO05D001946 2.7e-47 193.0 238 46.2
Os10g0407500 Oryza sativa ssp. japonica HOM05D001764 ORTHO05D001946 3.5e-47 192.6 195 51.8
Nitab4.5_0001195g0030 Nicotiana tabacum HOM05D001764 ORTHO05D001946 6.0e-47 191.8 194 49.5
Actinidia04870 Actinidia chinensis HOM05D001764 ORTHO05D001946 7.8e-47 191.4 183 54.1
Carub.0006s0667 Capsella rubella HOM05D001764 ORTHO05D001946 7.8e-47 191.4 238 46.2
AT5G07710 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 2.3e-46 189.9 257 45.1
Gohir.D11G035332 Gossypium hirsutum HOM05D001764 ORTHO05D001946 3.0e-46 189.5 189 54.0
TAR217G0002 Trochodendron aralioides HOM05D001764 ORTHO05D001946 3.9e-46 189.1 194 53.6
Zm00001eb223190 Zea mays HOM05D001764 ORTHO05D001946 3.9e-46 189.1 195 50.3
ATR0564G211 Amborella trichopoda HOM05D001764 ORTHO05D001946 8.6e-46 188.0 196 49.0
CARHR205440 Cardamine hirsuta HOM05D001764 ORTHO05D001946 8.6e-46 188.0 239 46.9
CAN.G847.2 Capsicum annuum HOM05D001764 ORTHO05D001946 1.1e-45 187.6 194 51.0
GSVIVG01007971001 Vitis vinifera HOM05D001764 ORTHO05D001946 1.1e-45 187.6 192 51.6
PGSC0003DMG400021936 Solanum tuberosum HOM05D001764 ORTHO05D001946 1.5e-45 187.2 193 50.3
BraA09t36380Z Brassica rapa HOM05D001764 ORTHO05D001946 1.9e-45 186.8 250 46.0
C09p08180 Brassica napus HOM05D001764 ORTHO05D001946 5.6e-45 185.3 251 45.8
BolC9t53730H Brassica oleracea HOM05D001764 ORTHO05D001946 5.6e-45 185.3 251 45.8
CARHR275150 Cardamine hirsuta HOM05D001764 ORTHO05D001946 5.6e-45 185.3 217 47.0
Sopen12g016340 Solanum pennellii HOM05D001764 ORTHO05D001946 7.3e-45 184.9 193 48.7
TAR217G0001 Trochodendron aralioides HOM05D001764 ORTHO05D001946 9.5e-45 184.5 241 46.9
unitig_62.g23551 Utricularia gibba HOM05D001764 ORTHO05D001946 1.2e-44 184.1 259 42.1
Nitab4.5_0001997g0090 Nicotiana tabacum HOM05D001764 ORTHO05D001946 2.1e-44 183.3 186 50.5
Solyc12g036220.3 Solanum lycopersicum HOM05D001764 ORTHO05D001946 3.6e-44 182.6 193 48.2
Ah.02g113720 Amaranthus hybridus HOM05D001764 ORTHO05D001946 6.2e-44 181.8 195 47.7
Sp2g24600 Schrenkiella parvula HOM05D001764 ORTHO05D001946 8.1e-44 181.4 251 43.8
Thhalv10004100m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 1.4e-43 180.6 265 41.5
AT5G61390 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 5.2e-43 178.7 258 42.2
AL8G38060 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 1.2e-42 177.6 252 43.3
AT1G74390 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 1.2e-42 177.6 268 41.8
THA.LOC104812092 Tarenaya hassleriana HOM05D001764 ORTHO05D001946 1.2e-42 177.6 210 48.6
Ciclev10020652m.g Citrus clementina HOM05D001764 ORTHO05D001946 2.6e-42 176.4 159 57.2
Sp5g29550 Schrenkiella parvula HOM05D001764 ORTHO05D001946 5.8e-42 175.3 207 48.3
Thhalv10018430m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 1.3e-41 174.1 265 40.8
AL2G34240 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 1.7e-41 173.7 268 41.0
Aa31LG4G4640 Aethionema arabicum HOM05D001764 ORTHO05D001946 2.9e-41 172.9 208 44.7
BcaC04g23453 Brassica carinata HOM05D001764 ORTHO05D001946 3.7e-41 172.6 233 45.5
Haze_07295 Corylus avellana HOM05D001764 ORTHO05D003857 3.7e-41 172.6 196 50.0
C06p48550 Brassica napus HOM05D001764 ORTHO05D001946 1.4e-40 170.6 265 42.6
Carub.0002s2116 Capsella rubella HOM05D001764 ORTHO05D001946 2.4e-40 169.9 266 41.4
Lsat_1_v5_gn_4_109301 Lactuca sativa HOM05D001764 ORTHO05D001946 2.1e-39 166.8 244 43.4
Carub.0008s2206 Capsella rubella HOM05D001764 ORTHO05D001946 4.6e-39 165.6 251 41.0
BolC6t39884H Brassica oleracea HOM05D001764 ORTHO05D001946 1.5e-37 160.6 267 41.2
A07p40200 Brassica napus HOM05D001764 ORTHO05D001946 4.3e-37 159.1 229 45.0
BraA07t31565Z Brassica rapa HOM05D001764 ORTHO05D001946 1.2e-36 157.5 229 43.7
AL2G17300 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 1.1e-35 154.5 192 47.9
SalBow5G2556 Salvia bowleyana HOM05D001764 ORTHO05D001946 2.4e-35 153.3 257 40.1
CARHR067650 Cardamine hirsuta HOM05D001764 ORTHO05D001946 3.1e-35 152.9 207 43.5
PGR083G1358 Punica granatum HOM05D001764 ORTHO05D001946 6.8e-35 151.8 161 51.6
SEGI_13176 Sequoiadendron giganteum HOM05D001764 ORTHO05D001946 9.2e-32 141.4 226 35.8
vmacro16525 Vaccinium macrocarpon HOM05D001764 ORTHO05D001946 1.2e-31 141.0 171 46.2
Nitab4.5_0000488g0080 Nicotiana tabacum HOM05D001764 ORTHO05D001946 1.6e-31 140.6 187 41.7
SGA_v2.0_scaffold25G10935 Striga asiatica HOM05D001764 ORTHO05D001946 2.1e-31 140.2 135 54.1
BcaC08g47002 Brassica carinata HOM05D001764 ORTHO05D001946 4.6e-31 139.0 260 38.8
Lsat_1_v5_gn_4_109181 Lactuca sativa HOM05D001764 ORTHO05D001946 1.7e-30 137.1 208 39.4
Os10g0426300 Oryza sativa ssp. japonica HOM05D001764 ORTHO05D001946 6.6e-30 135.2 209 40.2
Dinv38741 Davidia involucrata HOM05D001764 ORTHO05D001946 1.1e-29 134.4 188 43.6
Cfa018912 Carpinus fangiana HOM05D001764 ORTHO05D001946 2.5e-29 133.3 116 59.5
Nitab4.5_0001613g0010 Nicotiana tabacum HOM05D001764 ORTHO05D001946 3.3e-29 132.9 186 41.4
PGSC0003DMG400019519 Solanum tuberosum HOM05D001764 ORTHO05D001946 5.6e-29 132.1 115 57.4
Actinidia19021 Actinidia chinensis HOM05D001764 ORTHO05D001946 1.2e-28 131.0 115 55.7
Rhsim12G0154300 Rhododendron simsii HOM05D001764 ORTHO05D001946 1.2e-28 131.0 210 41.4
Os10g0407400 Oryza sativa ssp. japonica HOM05D001764 ORTHO05D001946 1.6e-28 130.6 154 44.8
Nn4g23268 Nelumbo nucifera HOM05D001764 ORTHO05D001946 2.1e-28 130.2 214 38.3
HPP92_006010 Vanilla planifolia HOM05D001764 ORTHO05D001946 1.1e-27 127.9 150 46.0
Sed0004706 Sechium edule HOM05D001764 ORTHO05D001946 1.4e-27 127.5 134 50.0
Hund09819 Selenicereus undatus HOM05D001764 ORTHO05D001946 1.8e-27 127.1 203 39.4
MD14G1204000 Malus domestica HOM05D001764 ORTHO05D001946 1.5e-26 124.0 112 60.7
CDE09G0781 Ceratophyllum demersum HOM05D001764 ORTHO05D001946 1.7e-25 120.6 239 35.1
PGSC0003DMG400021376 Solanum tuberosum HOM05D001764 ORTHO05D001946 3.8e-25 119.4 189 38.6
Hund02628 Selenicereus undatus HOM05D001764 ORTHO05D001946 6.4e-25 118.6 186 39.8
Eucgr.K01210 Eucalyptus grandis HOM05D001764 ORTHO05D001946 2.4e-24 116.7 185 38.9
Eucgr.K01202 Eucalyptus grandis HOM05D001764 ORTHO05D001946 1.6e-23 114.0 185 38.4
Zm00001eb022860 Zea mays HOM05D001764 ORTHO05D028412 2.7e-23 113.2 209 37.3
CSS0023502 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 3.0e-22 109.8 166 42.2
Rhsim12G0154200 Rhododendron simsii HOM05D001764 ORTHO05D001946 3.4e-18 96.3 74 62.2
Eucgr.K01201 Eucalyptus grandis HOM05D001764 ORTHO05D001946 4.2e-16 89.4 204 33.8
Eucgr.K01204 Eucalyptus grandis HOM05D001764 ORTHO05D001946 7.4e-13 78.6 111 45.0


User provided reference genes

Program Settings