Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 2.8e-103 378.6 191 100.0
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 1.1e-88 330.1 191 89.0
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 1.5e-88 329.7 191 88.0
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 6.8e-86 320.9 192 85.4
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.2e-85 320.1 192 85.4
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 1.5e-85 319.7 192 85.4
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.0e-85 319.3 192 85.4
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 1.2e-74 283.5 191 77.0
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 7.8e-74 280.8 185 76.2
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 7.8e-74 280.8 185 76.2
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 8.7e-73 277.3 192 76.6
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 2.5e-72 275.8 193 75.1
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 8.1e-71 270.8 185 73.0
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 1.4e-70 270.0 191 72.8
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 1.8e-70 269.6 192 72.9
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 6.9e-70 267.7 190 71.6
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 1.5e-69 266.5 185 72.4
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 1.7e-68 263.1 185 74.6
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 4.9e-68 261.5 185 69.2
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 1.1e-67 260.4 191 68.6
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 5.4e-67 258.1 191 69.6
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 2.7e-66 255.8 191 69.1
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 1.0e-65 253.8 191 70.7
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 1.3e-65 253.4 193 71.0
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 2.3e-65 252.7 185 70.8
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 5.1e-65 251.5 185 71.4
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 5.1e-65 251.5 185 72.4
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 1.1e-64 250.4 191 68.6
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 1.5e-64 250.0 191 69.1
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 2.5e-64 249.2 185 70.3
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 3.3e-64 248.8 185 68.6
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.6e-63 246.5 192 67.2
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 1.6e-63 246.5 191 66.5
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 1.6e-63 246.5 189 69.3
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 2.1e-63 246.1 191 68.6
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 2.1e-63 246.1 185 66.5
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 6.2e-63 244.6 191 64.9
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 6.2e-63 244.6 192 67.7
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 1.1e-62 243.8 189 64.6
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 3.1e-62 242.3 185 66.5
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 3.1e-62 242.3 182 69.2
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 4.0e-62 241.9 191 66.5
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 6.9e-62 241.1 191 66.5
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 9.0e-62 240.7 192 68.8
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 1.2e-61 240.4 194 66.5
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 2.0e-61 239.6 185 67.0
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 3.4e-61 238.8 191 64.9
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 9.9e-61 237.3 191 69.1
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 1.3e-60 236.9 184 66.8
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 1.3e-60 236.9 184 66.8
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 1.3e-60 236.9 127 88.2
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 1.3e-60 236.9 192 67.2
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 1.7e-60 236.5 187 67.4
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 2.9e-60 235.7 184 66.8
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 8.4e-60 234.2 189 66.1
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 4.2e-59 231.9 185 67.0
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 4.2e-59 231.9 190 65.3
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 4.2e-59 231.9 181 67.4
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 5.5e-59 231.5 190 65.3
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 1.2e-58 230.3 185 65.9
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 2.1e-58 229.6 191 66.0
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 2.1e-58 229.6 186 64.0
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 2.7e-58 229.2 191 66.0
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 6.0e-58 228.0 192 64.6
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 7.9e-58 227.6 191 62.8
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 1.0e-57 227.3 186 64.5
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 1.8e-57 226.5 189 64.6
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 3.3e-56 222.2 193 65.8
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 1.3e-55 220.3 134 79.1
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 3.7e-55 218.8 155 74.2
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 8.1e-55 217.6 156 73.1
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 4.0e-54 215.3 176 64.8
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 5.8e-53 211.5 191 59.7
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 7.6e-53 211.1 121 80.2
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 6.5e-52 208.0 124 83.1
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 1.1e-51 207.2 189 58.7
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 7.1e-51 204.5 197 57.9
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 9.3e-51 204.1 183 59.6
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 9.3e-51 204.1 183 59.6
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 1.6e-50 203.4 113 84.1
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 1.6e-50 203.4 183 60.1
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 4.6e-50 201.8 183 59.6
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 4.6e-50 201.8 183 60.1
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 1.0e-49 200.7 183 59.0
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 1.0e-49 200.7 183 59.0
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.0e-49 200.7 188 58.0
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 3.0e-49 199.1 183 59.0
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 3.9e-49 198.7 117 83.8
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 5.1e-49 198.4 128 75.0
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 8.7e-49 197.6 183 59.6
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 8.7e-49 197.6 185 59.5
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 1.5e-48 196.8 184 59.8
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 1.5e-48 196.8 183 58.5
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 1.9e-48 196.4 183 58.5
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 4.3e-48 195.3 183 59.6
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 4.3e-48 195.3 183 59.6
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 1.3e-47 193.7 188 59.0
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 1.9e-43 179.9 149 61.1
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 2.5e-43 179.5 112 73.2
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 5.5e-43 178.3 188 54.8
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 1.8e-41 173.3 137 63.5
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 1.2e-37 160.6 186 48.4
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 6.1e-34 148.3 96 69.8
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 9.7e-32 141.0 184 49.5
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 2.8e-31 139.4 119 58.8
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 1.3e-28 130.6 133 53.4
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 7.0e-22 108.2 191 44.0
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 1.9e-19 100.1 103 50.5
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 4.2e-19 99.0 115 51.3
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 4.2e-19 99.0 102 46.1
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 7.2e-19 98.2 166 38.6
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 2.2e-12 76.6 45 77.8
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.4e-09 67.4 52 73.1
Rhsim08G0168600 Rhododendron simsii HOM05D000306 ORTHO05D023263 6.3e-07 58.5 185 28.6


User provided reference genes

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