Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 3.6e-45 184.5 91 100.0
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 6.9e-28 127.1 93 69.9
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 5.5e-25 117.5 97 68.0
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 4.3e-22 107.8 98 64.3
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 4.3e-22 107.8 98 64.3
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 4.3e-22 107.8 84 69.0
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 7.4e-22 107.1 93 61.3
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 9.7e-22 106.7 99 64.6
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 8.2e-21 103.6 91 59.3
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 3.1e-20 101.7 95 60.0
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 1.3e-18 96.3 93 61.3
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 2.9e-18 95.1 98 58.2
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 5.0e-18 94.4 85 57.6
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 1.4e-17 92.8 100 56.0
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 4.2e-17 91.3 84 60.7
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 9.3e-17 90.1 90 58.9
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 9.3e-17 90.1 90 58.9
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 7.9e-16 87.0 90 57.8
Oeu047292.1 Olea europaea HOM05D007106 ORTHO05D007770 7.9e-16 87.0 97 50.5
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 1.4e-15 86.3 95 51.6
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 3.0e-15 85.1 99 53.5
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 3.9e-15 84.7 94 54.3
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 3.9e-15 84.7 91 54.9
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 6.7e-15 84.0 94 51.1
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 1.1e-14 83.2 90 55.6
Atru.chr9.252 Acer truncatum HOM05D007106 ORTHO05D007770 1.5e-14 82.8 86 58.1
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.9e-14 82.4 91 52.7
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.9e-14 82.4 91 52.7
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 1.9e-14 82.4 99 52.5
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 4.3e-14 81.3 99 46.5
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 7.4e-14 80.5 94 51.1
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 9.7e-14 80.1 89 52.8
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 9.7e-14 80.1 89 52.8
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 9.7e-14 80.1 98 48.0
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.3e-13 79.7 81 56.8
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 1.3e-13 79.7 81 56.8
PGR083G1166 Punica granatum HOM05D007106 ORTHO05D007770 1.7e-13 79.3 94 48.9
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 2.8e-13 78.6 96 51.0
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.8e-13 78.6 81 55.6
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 2.8e-13 78.6 88 52.3
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 3.7e-13 78.2 90 55.6
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 3.7e-13 78.2 84 56.0
CiPaw.12G013000 Carya illinoinensis HOM05D007106 ORTHO05D007770 6.3e-13 77.4 85 54.1
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 6.3e-13 77.4 96 50.0
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 1.1e-12 76.6 90 52.2
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 1.1e-12 76.6 79 58.2
Glyma.17G100900 Glycine max HOM05D007106 ORTHO05D007770 1.4e-12 76.3 85 55.3
Psat5g199960 Pisum sativum HOM05D007106 ORTHO05D007770 3.1e-12 75.1 89 49.4
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 6.9e-12 73.9 98 43.9
Medtr3g435530 Medicago truncatula HOM05D007106 ORTHO05D007770 1.2e-11 73.2 89 48.3
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 2.0e-11 72.4 89 49.4
Potri.015G062300 Populus trichocarpa HOM05D007106 ORTHO05D007770 2.0e-11 72.4 97 46.4
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 2.6e-11 72.0 91 48.4
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 2.6e-11 72.0 94 48.9
Ah.11g048350 Amaranthus hybridus HOM05D007106 ORTHO05D007770 3.4e-11 71.6 103 49.5
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 3.4e-11 71.6 97 49.5
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 3.4e-11 71.6 86 53.5
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 5.9e-11 70.9 97 48.5
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 1.7e-10 69.3 91 50.5
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 2.2e-10 68.9 90 44.4
THA.LOC104821419 Tarenaya hassleriana HOM05D012999 ORTHO05D007770 2.9e-10 68.6 96 45.8
Nitab4.5_0000121g0170 Nicotiana tabacum HOM05D007106 ORTHO05D007770 3.8e-10 68.2 84 50.0
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 5.0e-10 67.8 85 47.1
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 6.5e-10 67.4 100 42.0
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 6.5e-10 67.4 87 48.3
Solyc03g115950.3 Solanum lycopersicum HOM05D007106 ORTHO05D007770 1.1e-09 66.6 93 44.1
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 1.4e-09 66.2 86 45.3
Peaxi162Scf01256g00221 Petunia axillaris HOM05D007106 ORTHO05D007770 1.9e-09 65.9 82 47.6
Lj4g0015417 Lotus japonicus HOM05D007106 ORTHO05D007770 3.2e-09 65.1 85 50.6
Haze_07318 Corylus avellana HOM05D007106 ORTHO05D007770 5.5e-09 64.3 46 69.6
Lj1g0012300 Lotus japonicus HOM05D007106 ORTHO05D007770 5.5e-09 64.3 84 48.8
Lalb_Chr23g0273781 Lupinus albus HOM05D007106 ORTHO05D007770 5.5e-09 64.3 85 48.2
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 7.2e-09 63.9 85 49.4
PGSC0003DMG400019509 Solanum tuberosum HOM05D007106 ORTHO05D007770 7.2e-09 63.9 94 43.6
Glyma.04G168400 Glycine max HOM05D007106 ORTHO05D007770 9.4e-09 63.5 91 41.8
EL10Ac5g11028 Beta vulgaris HOM05D007106 ORTHO05D007770 1.2e-08 63.2 100 49.0
THA.LOC104812541 Tarenaya hassleriana HOM05D007106 ORTHO05D007770 1.6e-08 62.8 50 56.0
SalBow7G1857 Salvia bowleyana HOM05D007106 ORTHO05D007770 2.1e-08 62.4 93 41.9
Solyc07g150120.1 Solanum lycopersicum HOM05D007106 ORTHO05D007770 2.1e-08 62.4 75 48.0
Nitab4.5_0008269g0020 Nicotiana tabacum HOM05D007106 ORTHO05D007770 3.6e-08 61.6 82 46.3
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 3.6e-08 61.6 91 49.5
TPR.G11889 Trifolium pratense HOM05D007106 ORTHO05D007770 3.6e-08 61.6 90 43.3
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 3.6e-08 61.6 88 48.9
TAR622G1352 Trochodendron aralioides HOM05D007106 ORTHO05D007770 3.6e-08 61.6 79 48.1
Aqoxy3G03422 Aquilegia oxysepala HOM05D007106 ORTHO05D007770 4.7e-08 61.2 95 42.1
Eucgr.B00514 Eucalyptus grandis HOM05D007106 ORTHO05D007770 6.1e-08 60.8 82 43.9
Glyma.06G194600 Glycine max HOM05D007106 ORTHO05D007770 6.1e-08 60.8 92 44.6
Haze_12000 Corylus avellana HOM05D007106 ORTHO05D007770 1.4e-07 59.7 89 43.8
PGSC0003DMG400019989 Solanum tuberosum HOM05D007106 ORTHO05D007770 1.8e-07 59.3 75 49.3
TAR371G0193 Trochodendron aralioides HOM05D007106 ORTHO05D007770 1.8e-07 59.3 92 45.7
arahy.Tifrunner.gnm1.ann1.Y9A4XN Arachis hypogaea HOM05D007106 ORTHO05D007770 3.0e-07 58.5 79 46.8
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 3.9e-07 58.2 82 41.5
Sopen12g025630 Solanum pennellii HOM05D007106 ORTHO05D007770 3.9e-07 58.2 75 45.3
Sopen06g004820 Solanum pennellii HOM05D007106 ORTHO05D007770 8.8e-07 57.0 75 46.7
arahy.Tifrunner.gnm1.ann1.DL456K Arachis hypogaea HOM05D007106 ORTHO05D007770 1.1e-06 56.6 86 48.8
ATR0564G057 Amborella trichopoda HOM05D007106 ORTHO05D007770 2.6e-06 55.5 83 41.0
Potri.008G087700 Populus trichocarpa HOM05D046622 ORTHO05D007770 2.6e-06 55.5 90 40.0
Cc11_g12880 Coffea canephora HOM05D007106 ORTHO05D007770 4.4e-06 54.7 83 43.4


User provided reference genes

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