Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 2.3e-180 635.6 349 100.0
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 4.4e-115 418.7 349 73.4
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 7.8e-112 407.9 341 71.8
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.3e-111 406.4 336 72.6
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.6e-109 400.2 348 68.4
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.6e-109 400.2 351 68.7
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.3e-108 396.4 350 68.6
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 5.8e-107 391.7 347 67.7
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 5.2e-100 368.6 351 65.8
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 3.7e-98 362.5 352 64.2
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.2e-91 340.9 344 64.5
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.4e-91 339.3 351 61.8
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 2.4e-89 333.2 346 61.8
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 9.2e-89 331.3 344 63.7
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.6e-87 325.1 353 60.3
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 4.3e-86 322.4 336 61.9
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 4.3e-86 322.4 338 62.7
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 2.8e-85 319.7 357 60.2
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.6e-85 319.3 316 63.0
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 8.1e-85 318.2 314 66.2
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 8.1e-85 318.2 357 59.4
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.0e-84 315.8 336 60.7
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.2e-83 314.3 350 61.1
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 7.6e-83 311.6 359 57.7
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.2e-82 310.1 349 59.6
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.9e-82 309.7 351 59.3
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.9e-82 309.7 344 57.8
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 2.9e-82 309.7 343 58.9
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 4.9e-82 308.9 345 60.6
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 8.4e-82 308.1 364 56.0
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 5.4e-81 305.4 359 57.7
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.0e-79 301.2 348 55.7
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.5e-78 297.4 350 56.9
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 1.9e-78 297.0 293 64.5
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.5e-75 285.8 354 53.7
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 7.6e-75 285.0 347 56.8
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 9.9e-75 284.6 351 55.3
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 3.8e-74 282.7 269 65.4
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.4e-73 280.8 339 54.9
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 3.2e-73 279.6 346 54.9
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 5.4e-73 278.9 341 55.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 7.1e-73 278.5 329 55.9
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 3.5e-72 276.2 361 53.2
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 7.9e-72 275.0 350 55.4
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 1.0e-71 274.6 347 54.5
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.3e-71 273.5 347 54.5
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.0e-71 273.1 349 55.3
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 3.0e-71 273.1 340 55.0
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 5.1e-71 272.3 353 54.7
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 1.3e-69 267.7 359 52.6
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.8e-69 266.5 357 54.3
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 1.1e-68 264.6 359 53.8
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 1.4e-68 264.2 355 50.7
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 9.0e-68 261.5 344 52.6
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 2.6e-67 260.0 343 53.1
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 5.8e-67 258.8 352 50.3
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 7.6e-67 258.5 370 50.5
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.9e-66 256.5 353 51.6
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 4.9e-66 255.8 378 50.3
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 4.9e-66 255.8 347 50.1
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 8.4e-66 255.0 328 55.2
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.1e-65 254.6 355 49.3
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.9e-65 253.8 350 52.3
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 2.4e-65 253.4 302 56.6
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 4.2e-65 252.7 314 54.1
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.1e-64 250.4 353 50.4
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.1e-64 250.4 354 50.8
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 2.7e-64 250.0 362 51.7
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.7e-64 250.0 341 49.9
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.7e-64 250.0 350 50.9
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 3.5e-64 249.6 330 51.5
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 7.9e-64 248.4 347 50.4
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 3.9e-63 246.1 365 49.9
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.9e-62 243.8 355 49.9
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.9e-62 243.8 354 50.0
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 3.3e-62 243.0 361 51.2
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 5.6e-62 242.3 343 51.0
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 7.4e-62 241.9 353 51.0
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 7.4e-62 241.9 354 48.3
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.6e-61 240.7 346 49.4
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 2.1e-61 240.4 364 50.0
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 2.8e-61 240.0 353 49.0
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 3.7e-61 239.6 330 50.0
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.1e-60 238.0 354 50.0
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.8e-60 237.3 348 50.3
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 5.3e-60 235.7 352 51.4
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 5.3e-60 235.7 354 47.7
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 5.3e-60 235.7 324 50.3
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 5.3e-60 235.7 334 51.2
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 6.9e-60 235.3 359 50.7
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.5e-59 234.2 358 50.6
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 7.6e-59 231.9 349 49.9
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 7.6e-59 231.9 348 48.9
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 2.9e-58 229.9 355 51.0
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 3.8e-58 229.6 353 49.3
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 3.8e-58 229.6 380 46.6
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.1e-57 228.0 346 48.0
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.5e-57 226.9 355 49.3
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 9.3e-57 224.9 306 51.0
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 2.1e-56 223.8 344 49.7
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.0e-55 221.5 340 49.7
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 3.0e-55 219.9 373 48.0
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 4.8e-53 212.6 350 47.1
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 2.0e-51 207.2 354 46.6
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 4.5e-51 206.1 256 55.5
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 5.9e-51 205.7 347 46.1
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 7.6e-51 205.3 309 49.5
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.3e-50 204.5 273 51.3
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 2.2e-50 203.8 366 46.4
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 7.2e-49 198.7 357 44.8
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 7.9e-48 195.3 358 42.5
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 2.3e-47 193.7 351 44.2
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 6.7e-47 192.2 348 43.1
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 3.1e-44 183.3 355 42.5
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 4.1e-44 183.0 359 42.6
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.2e-43 181.4 337 43.9
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 1.0e-42 178.3 318 43.7
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 2.5e-41 173.7 343 41.4
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 4.2e-41 172.9 341 42.2
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 6.1e-40 169.1 348 39.7
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.4e-39 167.9 330 41.5
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 1.5e-38 164.5 277 44.8
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 2.6e-38 163.7 349 39.5
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 1.7e-37 161.0 354 39.3
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.7e-37 161.0 354 39.3
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.7e-37 161.0 354 39.3
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 2.4e-36 157.1 312 41.3
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 6.9e-36 155.6 356 37.9
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 2.2e-34 150.6 242 45.5
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 4.2e-33 146.4 370 38.1
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.5e-30 137.9 347 37.2
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 5.7e-22 109.4 173 47.4
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 7.0e-20 102.4 425 30.6
TAR375G0593 Trochodendron aralioides HOM05D005535 ORTHO05D006753 4.2e-09 66.6 68 54.4
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 7.2e-09 65.9 91 39.6
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 9.5e-09 65.5 197 33.0
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 9.5e-09 65.5 135 37.0
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.2e-08 65.1 89 44.9
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 3.6e-08 63.5 133 31.6
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 3.6e-08 63.5 99 42.4
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 4.7e-08 63.2 133 31.6
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 6.1e-08 62.8 36 86.1
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 1.0e-07 62.0 61 44.3
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 1.4e-07 61.6 90 41.1
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.4e-07 61.6 122 34.4
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 1.4e-07 61.6 97 38.1
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.8e-07 61.2 84 40.5
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 2.3e-07 60.8 84 38.1
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 3.0e-07 60.5 120 33.3
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 4.0e-07 60.1 84 36.9
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 4.0e-07 60.1 106 37.7
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 4.0e-07 60.1 238 30.3
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 6.8e-07 59.3 84 36.9
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 6.8e-07 59.3 108 36.1
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 8.9e-07 58.9 117 35.0
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 8.9e-07 58.9 104 39.4
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 1.2e-06 58.5 84 36.9
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 2.0e-06 57.8 215 29.8
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 2.0e-06 57.8 84 36.9
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 2.6e-06 57.4 86 34.9
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 4.4e-06 56.6 85 36.5
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 5.7e-06 56.2 110 34.5
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 7.5e-06 55.8 103 33.0
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 9.8e-06 55.5 159 27.0


User provided reference genes

Program Settings