Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 2.2e-219 765.4 393 100.0
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 1.7e-176 622.9 393 78.9
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.1e-173 612.1 394 77.4
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.8e-172 607.8 394 76.9
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.8e-172 607.8 394 76.6
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 1.1e-170 603.6 394 76.9
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.9e-170 602.8 394 76.6
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 3.1e-165 585.5 395 76.2
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.2e-148 530.4 393 66.4
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 1.5e-143 513.5 393 64.4
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 5.6e-143 511.5 392 64.5
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 9.9e-140 500.7 392 62.2
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 1.6e-137 493.4 390 62.6
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 2.3e-136 489.6 389 61.2
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 5.1e-136 488.4 391 62.1
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 6.7e-136 488.0 390 61.3
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 5.6e-135 485.0 392 61.5
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 1.6e-134 483.4 376 63.3
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 4.8e-134 481.9 391 61.6
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 4.8e-134 481.9 391 61.4
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 6.2e-134 481.5 391 61.6
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 1.1e-133 480.7 391 63.7
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.4e-133 480.3 392 61.7
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 1.4e-133 480.3 390 62.3
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 3.1e-133 479.2 392 61.2
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 2.9e-131 472.6 392 60.7
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 3.8e-131 472.2 392 60.7
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 1.4e-130 470.3 392 59.7
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 1.4e-130 470.3 392 60.5
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 5.5e-130 468.4 383 60.8
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 7.1e-130 468.0 393 58.5
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 1.6e-129 466.8 393 59.0
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 2.1e-129 466.5 391 57.5
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 2.5e-127 459.5 394 57.9
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 7.4e-127 458.0 391 58.6
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 8.1e-126 454.5 392 57.4
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 1.1e-125 454.1 392 58.2
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 1.8e-125 453.4 392 56.4
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 9.0e-125 451.1 393 56.5
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 9.0e-125 451.1 389 56.8
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 9.0e-125 451.1 389 56.0
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 1.5e-124 450.3 393 57.8
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 7.6e-124 448.0 393 55.2
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 1.0e-123 447.6 394 55.6
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 1.0e-123 447.6 391 55.8
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 1.7e-123 446.8 392 55.4
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 2.9e-123 446.0 392 56.4
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 8.4e-123 444.5 392 57.4
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 1.1e-122 444.1 349 62.5
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 1.1e-122 444.1 391 57.0
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.9e-122 443.4 392 54.8
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 1.9e-122 443.4 392 54.8
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.9e-122 443.4 391 55.5
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.5e-122 443.0 391 54.7
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 7.1e-122 441.4 364 60.4
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 2.3e-120 436.4 389 55.3
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 1.5e-119 433.7 392 55.1
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 1.9e-119 433.3 391 54.2
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 5.3e-117 425.2 392 55.1
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 7.6e-116 421.4 388 53.4
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 7.2e-114 414.8 394 54.1
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 4.6e-113 412.1 392 53.1
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 7.9e-113 411.4 410 51.7
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 1.8e-112 410.2 396 53.5
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 6.7e-112 408.3 394 54.6
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 1.9e-111 406.8 389 52.4
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 1.9e-111 406.8 395 52.2
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.3e-110 404.1 389 51.7
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 1.3e-110 404.1 389 53.0
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.8e-109 400.2 389 53.5
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 3.1e-109 399.4 392 52.8
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 3.1e-109 399.4 417 51.1
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 1.5e-108 397.1 389 51.9
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 2.0e-108 396.7 391 49.4
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 4.5e-108 395.6 391 49.4
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 7.7e-108 394.8 391 50.4
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 2.2e-107 393.3 416 49.3
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 2.2e-107 393.3 416 49.3
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 5.5e-106 388.7 416 48.6
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 5.5e-106 388.7 389 49.4
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 4.6e-105 385.6 395 50.1
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 6.7e-104 381.7 392 51.3
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 8.8e-104 381.3 402 49.8
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 1.1e-103 380.9 393 49.9
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 4.4e-103 379.0 393 49.9
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 5.7e-103 378.6 394 50.0
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 7.4e-103 378.3 393 49.4
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 9.7e-103 377.9 392 50.3
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 3.7e-102 375.9 398 50.3
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.5e-100 370.5 397 48.6
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 1.5e-100 370.5 397 50.1
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 3.4e-100 369.4 392 51.0
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 5.0e-99 365.5 418 46.9
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 3.2e-98 362.8 400 48.5
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 9.4e-98 361.3 400 47.8
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 2.0e-95 353.6 388 49.5
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 5.7e-95 352.1 308 57.8
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 2.8e-94 349.7 310 58.1
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.1e-93 347.8 393 46.8
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 2.4e-93 346.7 392 48.0
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.6e-92 344.0 393 47.6
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 2.6e-92 343.2 392 47.7
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 7.7e-92 341.7 385 48.3
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 1.6e-89 334.0 369 46.9
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 9.7e-87 324.7 263 58.6
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 9.7e-87 324.7 333 50.5
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 9.7e-87 324.7 386 45.6
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 1.7e-86 323.9 393 44.8
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 3.1e-85 319.7 395 46.1
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 7.5e-79 298.5 272 52.9
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 2.4e-69 266.9 294 47.3
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 3.4e-63 246.5 420 39.0
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 4.9e-62 242.7 178 67.4
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 1.4e-40 171.4 379 30.9
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 1.5e-39 167.9 378 30.4
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 4.9e-38 162.9 325 35.7
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 6.4e-38 162.5 254 35.8
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 4.6e-36 156.4 340 32.1
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 1.4e-32 144.8 246 38.2
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 8.7e-27 125.6 389 27.8
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 8.7e-27 125.6 389 27.8
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 2.8e-25 120.6 180 41.1
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 6.2e-25 119.4 389 27.2
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.0e-23 114.4 430 27.9
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 4.5e-23 113.2 177 42.9
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 1.3e-22 111.7 347 27.4
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 7.1e-21 105.9 333 25.5
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 2.3e-19 100.9 105 47.6
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 1.5e-10 71.6 275 27.6
COL.COLO4_31086 Corchorus olitorius HOM05D002504 ORTHO05D007555 1.7e-06 58.2 62 43.5
AagrBONN_evm.TU.Sc2ySwM_362.2581 Anthoceros agrestis HOM05D002504 ORTHO05D007555 8.4e-06 55.8 177 26.6


User provided reference genes

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