Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 7.6e-83 310.8 206 100.0
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 6.7e-63 244.6 206 77.7
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 1.7e-53 213.4 206 70.9
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 5.0e-50 201.8 209 68.9
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.1e-49 200.7 209 67.0
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 9.4e-49 197.6 208 67.8
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 1.2e-48 197.2 210 68.1
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 3.6e-48 195.7 210 67.6
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 1.3e-45 187.2 203 65.5
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 6.3e-45 184.9 181 68.0
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 1.1e-44 184.1 207 64.7
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 5.9e-43 178.3 203 63.5
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 7.7e-43 177.9 189 65.1
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 7.7e-43 177.9 179 68.7
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 7.7e-43 177.9 181 68.0
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.0e-42 177.6 206 65.0
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.3e-42 177.2 175 70.9
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.3e-42 177.2 181 68.5
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 3.8e-42 175.6 183 66.7
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 5.0e-42 175.3 201 64.2
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 6.5e-42 174.9 206 61.7
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 6.5e-42 174.9 206 61.7
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 8.5e-42 174.5 177 65.0
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 1.1e-41 174.1 204 64.7
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 1.5e-41 173.7 204 63.2
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 4.2e-41 172.2 206 61.2
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 4.2e-41 172.2 177 66.1
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 5.5e-41 171.8 202 62.4
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 7.2e-41 171.4 202 62.9
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 7.2e-41 171.4 161 68.9
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 7.2e-41 171.4 170 68.2
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 7.2e-41 171.4 191 68.6
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 1.2e-40 170.6 166 68.7
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 1.2e-40 170.6 181 63.5
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.6e-40 170.2 201 61.7
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 2.1e-40 169.9 166 68.1
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 3.6e-40 169.1 151 75.5
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 4.7e-40 168.7 201 62.2
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 6.1e-40 168.3 171 74.9
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 6.1e-40 168.3 159 71.7
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 6.1e-40 168.3 185 62.2
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 8.0e-40 167.9 161 69.6
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 1.4e-39 167.2 192 61.5
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 1.8e-39 166.8 166 67.5
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 2.3e-39 166.4 191 62.8
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 2.3e-39 166.4 154 72.1
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 4.0e-39 165.6 181 64.1
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 5.2e-39 165.2 189 63.5
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 5.2e-39 165.2 147 76.2
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 6.8e-39 164.9 206 58.7
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 6.8e-39 164.9 199 60.8
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 6.8e-39 164.9 199 60.8
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 8.8e-39 164.5 208 61.1
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 1.2e-38 164.1 206 60.2
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 1.5e-38 163.7 182 63.2
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 1.5e-38 163.7 190 62.1
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 4.4e-38 162.2 169 65.1
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 7.5e-38 161.4 189 62.4
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 1.3e-37 160.6 161 70.2
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 2.2e-37 159.8 193 59.6
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 2.2e-37 159.8 206 58.7
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 3.7e-37 159.1 154 69.5
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 4.8e-37 158.7 158 67.7
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 4.8e-37 158.7 158 68.4
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 4.8e-37 158.7 158 68.4
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 4.8e-37 158.7 171 64.9
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 4.8e-37 158.7 188 60.6
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 4.8e-37 158.7 170 64.7
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 1.1e-36 157.5 176 59.7
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 1.1e-36 157.5 164 65.2
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 1.1e-36 157.5 170 63.5
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 1.4e-36 157.1 167 66.5
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 1.4e-36 157.1 175 70.9
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 1.8e-36 156.8 170 62.9
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 1.8e-36 156.8 170 62.9
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 1.8e-36 156.8 188 60.1
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 1.8e-36 156.8 170 62.9
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 1.8e-36 156.8 157 66.2
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 2.4e-36 156.4 185 62.2
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 3.1e-36 156.0 149 71.1
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 3.1e-36 156.0 202 58.9
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 4.1e-36 155.6 170 62.4
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 4.1e-36 155.6 156 68.6
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 5.4e-36 155.2 188 60.1
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 7.0e-36 154.8 206 55.3
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 9.1e-36 154.5 209 61.7
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.6e-35 153.7 150 69.3
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 3.5e-35 152.5 149 71.1
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 4.5e-35 152.1 148 68.9
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 4.5e-35 152.1 161 62.7
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 2.3e-34 149.8 162 63.6
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 2.9e-34 149.4 205 56.1
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 2.9e-34 149.4 205 57.1
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 3.8e-34 149.1 198 60.6
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 3.8e-34 149.1 166 60.2
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 3.8e-34 149.1 166 60.2
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 3.8e-34 149.1 173 60.7
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 6.5e-34 148.3 156 64.7
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 8.6e-34 147.9 170 60.6
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 1.1e-33 147.5 207 55.1
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 9.5e-33 144.4 204 52.9
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 1.6e-32 143.7 200 60.5
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 8.0e-32 141.4 161 62.1
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 4.9e-29 132.1 206 53.9
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 8.3e-29 131.3 157 56.7
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 1.8e-28 130.2 156 60.3
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 3.5e-27 125.9 132 66.7
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 1.7e-21 107.1 208 52.9
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 6.4e-21 105.1 150 63.3
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 3.2e-20 102.8 169 56.8
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 9.2e-20 101.3 152 53.9
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.2e-19 100.9 140 66.4
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 1.2e-16 90.9 118 49.2
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 3.6e-16 89.4 168 54.2
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 1.8e-15 87.0 159 47.2
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 8.9e-15 84.7 62 61.3
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 2.6e-14 83.2 94 58.5
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 5.8e-14 82.0 72 52.8
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 7.5e-06 55.1 158 46.2
Nitab4.5_0006079g0040 Nicotiana tabacum HOM05D006349 ORTHO05D008205 9.9e-06 54.7 47 74.5


User provided reference genes

Program Settings