Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 1.4e-167 592.8 297 100.0
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 5.8e-92 341.7 241 73.9
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.4e-90 336.3 245 71.0
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 2.4e-90 336.3 246 72.0
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 4.2e-90 335.5 241 73.0
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 7.9e-89 331.3 262 67.9
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 3.3e-87 325.9 263 66.5
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.6e-86 323.6 263 65.0
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 8.4e-83 311.2 187 82.4
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.1e-82 310.8 253 66.8
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 1.4e-82 310.5 249 68.3
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 5.5e-82 308.5 190 81.6
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 5.5e-82 308.5 240 67.9
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 7.1e-82 308.1 249 68.3
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 1.2e-81 307.4 186 79.0
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 3.5e-81 305.8 200 76.0
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 4.6e-81 305.4 202 75.2
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.3e-80 303.9 249 66.7
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 2.3e-80 303.1 264 64.0
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 3.0e-80 302.8 188 78.7
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 5.1e-80 302.0 245 67.3
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 5.1e-80 302.0 248 68.5
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 4.8e-78 295.4 201 73.6
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 8.2e-78 294.7 178 80.3
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.4e-77 293.9 192 77.6
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 1.8e-77 293.5 240 67.1
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 6.9e-77 291.6 190 77.4
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 9.0e-77 291.2 209 69.4
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 7.6e-76 288.1 189 75.1
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.0e-75 287.7 192 72.9
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 4.9e-75 285.4 207 69.6
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.4e-74 283.9 189 73.5
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 1.9e-74 283.5 189 76.7
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 1.9e-74 283.5 192 71.9
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 3.2e-74 282.7 239 59.8
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 3.2e-74 282.7 255 62.7
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 5.5e-74 282.0 179 77.7
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 7.1e-74 281.6 187 73.8
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 9.3e-74 281.2 178 75.3
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 9.3e-74 281.2 181 77.3
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 2.1e-73 280.0 248 61.7
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 2.7e-73 279.6 234 65.0
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 4.6e-73 278.9 219 65.3
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 4.6e-73 278.9 171 79.5
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 6.0e-73 278.5 202 67.3
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 7.9e-73 278.1 197 69.5
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 7.9e-73 278.1 215 65.6
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 7.9e-73 278.1 184 77.2
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 7.9e-73 278.1 248 65.7
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 7.9e-73 278.1 251 63.3
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 1.3e-72 277.3 234 62.4
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.3e-72 276.6 196 69.4
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 5.1e-72 275.4 196 68.4
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 5.1e-72 275.4 244 62.7
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 6.7e-72 275.0 212 64.6
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 6.7e-72 275.0 268 60.8
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 6.7e-72 275.0 162 82.1
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 6.7e-72 275.0 187 71.7
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 8.7e-72 274.6 224 62.9
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 8.7e-72 274.6 242 60.3
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.1e-71 274.2 195 68.7
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 2.5e-71 273.1 217 63.1
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 3.3e-71 272.7 180 71.1
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 3.3e-71 272.7 212 63.7
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 7.4e-71 271.6 251 58.6
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 7.4e-71 271.6 187 69.0
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 9.7e-71 271.2 237 63.3
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 1.6e-70 270.4 191 68.6
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 3.7e-70 269.2 177 74.0
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 4.8e-70 268.9 183 72.7
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 4.8e-70 268.9 187 69.0
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 6.3e-70 268.5 200 65.5
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 8.2e-70 268.1 246 57.3
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 2.4e-69 266.5 191 70.2
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 2.4e-69 266.5 191 70.2
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 2.4e-69 266.5 204 65.2
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 4.1e-69 265.8 186 68.8
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 5.3e-69 265.4 196 66.3
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.2e-68 264.2 194 67.0
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 1.2e-68 264.2 169 78.1
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 1.5e-68 263.8 191 70.2
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 1.5e-68 263.8 246 56.1
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 2.0e-68 263.5 246 55.7
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 2.0e-68 263.5 246 56.1
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 2.0e-68 263.5 246 56.1
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 5.9e-68 261.9 177 73.4
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 5.9e-68 261.9 196 66.3
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 5.9e-68 261.9 196 66.3
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 2.9e-67 259.6 230 61.7
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 2.9e-67 259.6 188 70.2
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 3.8e-67 259.2 212 61.8
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 1.1e-66 257.7 179 68.2
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.1e-66 257.7 188 64.9
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 5.5e-66 255.4 212 60.8
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 2.1e-65 253.4 187 64.7
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 1.4e-64 250.8 184 67.4
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 1.4e-64 250.8 270 55.6
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 1.8e-64 250.4 178 70.2
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 1.8e-64 250.4 184 66.8
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 2.3e-64 250.0 171 68.4
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 5.1e-64 248.8 176 68.8
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 6.7e-64 248.4 179 68.2
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.1e-63 247.7 230 61.3
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 7.4e-63 245.0 154 76.0
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.4e-61 240.7 144 80.6
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 2.9e-59 233.0 166 65.7
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 7.2e-58 228.4 199 60.3
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.2e-57 227.6 172 69.8
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.3e-54 217.6 197 56.9
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 3.1e-53 213.0 126 84.1
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 2.0e-52 210.3 168 66.1
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 5.0e-51 205.7 195 62.1
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 8.8e-48 194.9 138 72.5
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 1.5e-47 194.1 157 58.0
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 5.7e-47 192.2 156 61.5
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 1.3e-46 191.0 128 71.9
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 1.3e-46 191.0 127 74.8
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 2.8e-46 189.9 189 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 4.8e-46 189.1 189 53.4
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.1e-45 188.0 144 62.5
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 1.8e-45 187.2 196 52.0
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 4.7e-41 172.6 95 86.3
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 1.5e-39 167.5 215 48.4
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 1.4e-37 161.0 148 60.8
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 5.9e-36 155.6 108 71.3
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 1.2e-33 147.9 82 84.1
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 1.3e-30 137.9 154 57.1
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 1.0e-24 118.2 91 69.2
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 1.0e-19 101.7 184 38.6
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 3.5e-12 76.6 50 70.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 1.4e-08 64.7 49 63.3
Cfa005086 Carpinus fangiana HOM05D005796 ORTHO05D007054 4.0e-08 63.2 147 39.5
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 9.8e-07 58.5 36 63.9


User provided reference genes

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