Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 3.5e-220 768.5 534 100.0
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 2.9e-166 589.3 548 80.5
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 4.2e-157 558.9 544 78.3
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 5.4e-157 558.5 536 71.8
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 1.9e-154 550.1 538 71.2
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.5e-151 540.4 542 72.3
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 2.4e-149 533.1 560 68.0
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 6.9e-144 515.0 538 68.4
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 6.0e-140 501.9 546 65.9
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.0e-139 501.1 543 65.0
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 4.5e-135 485.7 543 65.7
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.9e-133 480.3 544 63.4
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.7e-132 476.5 543 69.6
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 9.7e-130 468.0 543 63.4
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 8.2e-129 464.9 559 64.6
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.4e-128 464.2 544 64.3
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.8e-128 463.8 546 65.2
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 6.9e-128 461.8 543 64.5
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 9.1e-128 461.5 546 65.0
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 2.0e-127 460.3 545 68.4
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.6e-127 459.9 550 63.1
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 5.0e-126 455.7 544 62.7
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.4e-125 454.1 547 62.2
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.2e-125 452.6 550 64.7
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 3.9e-123 446.0 569 62.7
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.5e-122 444.1 548 66.8
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 3.3e-122 443.0 545 60.9
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 8.2e-121 438.3 554 63.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.2e-121 438.3 549 66.3
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 3.1e-120 436.4 539 64.2
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 5.3e-120 435.6 548 63.1
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 5.3e-120 435.6 546 63.9
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.2e-119 434.5 532 61.3
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.0e-118 431.4 553 59.5
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.0e-118 431.4 538 63.0
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 6.5e-118 428.7 545 60.9
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.1e-117 427.9 547 57.8
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.9e-117 427.2 550 63.8
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 3.2e-117 426.4 548 60.8
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 7.2e-117 425.2 548 58.8
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.2e-116 424.5 591 57.7
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.6e-116 424.1 539 60.3
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.7e-116 423.3 547 62.5
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 4.7e-116 422.5 557 60.9
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.0e-115 421.4 546 60.3
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.8e-115 420.6 548 67.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.8e-115 420.6 547 61.8
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.8e-112 410.6 548 63.5
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 3.1e-112 409.8 547 57.4
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.2e-111 407.9 550 63.8
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 2.0e-111 407.1 548 61.1
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.0e-111 407.1 547 59.8
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 2.6e-111 406.8 548 60.6
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 5.0e-110 402.5 543 63.9
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 4.2e-109 399.4 553 61.7
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 2.7e-108 396.7 542 64.9
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 3.6e-108 396.4 545 58.0
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.0e-107 394.8 538 58.2
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.8e-107 394.0 547 64.2
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 5.2e-107 392.5 538 58.2
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 2.6e-106 390.2 554 54.0
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 4.4e-106 389.4 530 60.6
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 5.7e-106 389.0 550 58.9
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.2e-105 387.1 540 57.4
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 1.4e-104 384.4 555 61.3
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 4.1e-104 382.9 537 68.0
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 5.3e-104 382.5 547 56.7
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 5.3e-104 382.5 551 58.3
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 1.2e-103 381.3 551 55.0
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 6.5e-102 375.6 537 54.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 2.5e-101 373.6 561 58.1
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.2e-101 372.9 547 58.0
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.7e-100 370.2 541 59.7
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 6.1e-100 369.0 562 56.0
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 4.4e-98 362.8 548 54.7
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 7.5e-98 362.1 549 55.6
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 9.8e-98 361.7 548 58.6
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.3e-97 361.3 549 55.7
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 8.3e-97 358.6 594 50.3
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.1e-96 358.2 545 54.9
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-95 354.8 549 58.7
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 5.9e-95 352.4 549 54.3
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.3e-94 350.5 548 57.7
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 2.0e-90 337.4 552 52.2
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 2.6e-90 337.0 546 58.4
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 9.8e-90 335.1 554 55.4
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.4e-88 331.3 571 53.1
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 5.0e-86 322.8 541 61.2
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 5.0e-86 322.8 543 58.0
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 7.3e-85 318.9 548 53.5
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 8.0e-84 315.5 556 54.7
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.0e-83 315.1 543 54.7
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.4e-83 314.7 461 58.4
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.4e-83 314.7 592 48.5
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 3.4e-82 310.1 541 51.8
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 3.7e-81 306.6 549 51.5
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 9.2e-80 302.0 548 51.6
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 1.3e-78 298.1 553 53.3
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 8.6e-78 295.4 487 55.6
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.9e-77 294.3 542 49.4
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.7e-76 289.7 294 67.3
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.4e-75 288.1 562 53.2
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.4e-75 288.1 550 53.1
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.8e-75 287.7 555 48.8
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 6.8e-75 285.8 545 51.0
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.3e-73 281.6 167 88.6
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 2.2e-73 280.8 577 48.0
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 6.4e-73 279.3 546 48.0
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 8.3e-73 278.9 546 50.5
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 2.4e-72 277.3 560 50.2
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 5.4e-72 276.2 579 48.5
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 2.1e-71 274.2 544 48.0
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.5e-69 268.1 182 77.5
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 3.3e-69 266.9 217 71.9
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-68 265.0 197 76.6
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 2.6e-66 257.3 587 53.3
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 3.7e-65 253.4 154 87.7
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.5e-61 240.7 493 46.0
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.4e-59 235.0 461 50.8
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 4.2e-56 223.4 176 69.3
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.0e-54 217.2 483 49.1
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.5e-53 214.2 164 73.8
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 5.4e-48 196.4 532 38.0
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 5.1e-46 189.9 431 45.2
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.5e-45 187.6 314 50.3
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 2.7e-39 167.5 374 45.7
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.0e-38 165.6 202 65.8
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 9.0e-35 152.5 285 49.5
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 9.3e-32 142.5 123 71.5
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 2.0e-26 124.8 109 70.6
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 3.4e-26 124.0 128 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.3e-25 122.1 514 39.3
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 6.5e-25 119.8 74 81.1
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 1.4e-24 118.6 80 67.5
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.5e-24 117.9 123 61.8
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 7.1e-24 116.3 111 64.9
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.1e-19 102.4 167 41.9
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 2.4e-19 101.3 99 64.6
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.1e-19 100.9 64 84.4
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 1.4e-16 92.0 103 58.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 6.1e-15 86.7 96 59.4
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.9e-15 86.3 117 53.8
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 5.1e-14 83.6 58 84.5
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.5e-13 82.0 86 58.1
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.4e-11 74.7 73 64.4
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.4e-11 74.7 73 64.4
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.4e-11 74.7 46 80.4
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 3.8e-09 67.4 75 56.0
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 1.9e-08 65.1 158 35.4
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.2e-08 63.2 117 61.5


User provided reference genes

Program Settings