Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 6.7e-199 697.2 363 100.0
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 6.8e-151 537.7 363 79.9
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 1.2e-139 500.4 365 75.9
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 9.8e-126 454.1 369 71.8
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.4e-124 449.5 367 71.1
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.1e-123 446.4 367 70.0
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.1e-123 446.4 367 70.3
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 2.5e-121 439.5 367 69.5
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 7.3e-121 438.0 367 69.8
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 7.6e-110 401.4 368 64.7
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 1.4e-103 380.6 369 61.8
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 5.1e-98 362.1 372 59.9
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 6.6e-98 361.7 368 59.5
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 7.6e-94 348.2 379 57.0
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 8.4e-93 344.7 365 57.3
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 4.2e-92 342.4 382 56.0
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 7.1e-92 341.7 371 56.3
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 6.0e-91 338.6 365 56.7
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 6.7e-90 335.1 375 57.1
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 8.7e-90 334.7 365 56.2
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 9.6e-89 331.3 386 56.5
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 4.8e-88 328.9 372 55.9
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 1.1e-87 327.8 376 55.9
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 2.0e-86 323.6 388 54.4
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 2.9e-85 319.7 386 53.6
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 6.0e-83 312.0 380 53.9
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 5.1e-82 308.9 373 53.6
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.9e-81 307.0 372 54.0
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 1.9e-81 307.0 386 52.1
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 2.5e-81 306.6 368 54.6
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.6e-80 303.9 370 55.4
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 3.7e-80 302.8 392 51.0
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 8.2e-80 301.6 387 51.2
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 3.1e-79 299.7 381 53.3
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 2.0e-78 297.0 371 52.8
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.5e-78 295.8 402 48.3
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 1.0e-77 294.7 370 52.7
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 1.3e-77 294.3 373 52.8
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 3.8e-77 292.7 378 50.5
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 4.9e-77 292.4 373 50.9
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 8.4e-77 291.6 369 53.7
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 1.2e-75 287.7 372 52.7
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 2.1e-75 287.0 372 53.5
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 6.0e-75 285.4 365 51.2
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 2.3e-74 283.5 436 47.5
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 3.9e-74 282.7 383 52.2
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 5.7e-73 278.9 459 44.9
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 4.5e-70 269.2 373 49.9
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 4.5e-70 269.2 374 49.5
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 3.8e-69 266.2 374 50.5
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 2.5e-68 263.5 366 48.4
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 2.5e-68 263.5 369 48.8
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 4.2e-68 262.7 374 48.9
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 9.4e-68 261.5 370 49.5
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 7.9e-67 258.5 364 47.3
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 1.3e-64 251.1 364 47.8
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 3.7e-64 249.6 304 53.9
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 6.3e-64 248.8 309 52.1
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 7.7e-62 241.9 373 46.1
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 2.2e-61 240.4 383 46.5
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 1.1e-60 238.0 317 49.5
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 9.4e-60 235.0 302 54.0
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 6.1e-59 232.3 367 47.1
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 2.6e-57 226.9 367 48.0
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 9.7e-57 224.9 362 46.4
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 1.3e-56 224.6 369 46.1
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 2.8e-56 223.4 406 42.6
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 3.1e-55 219.9 372 45.4
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 9.1e-55 218.4 427 40.3
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 3.9e-50 203.0 373 43.7
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 5.2e-50 202.6 372 43.8
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 5.2e-50 202.6 391 41.2
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 9.7e-49 198.4 379 42.2
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 2.8e-48 196.8 374 42.2
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 2.8e-48 196.8 404 41.1
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 9.1e-47 191.8 410 39.5
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 3.5e-46 189.9 305 46.6
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 5.9e-46 189.1 376 41.5
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 7.7e-46 188.7 363 41.3
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 3.8e-45 186.4 304 46.7
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 2.5e-44 183.7 349 41.5
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 3.6e-43 179.9 366 41.0
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 3.0e-42 176.8 374 41.4
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 3.0e-42 176.8 377 41.4
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 3.0e-42 176.8 374 41.4
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 4.0e-42 176.4 370 39.7
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 8.8e-42 175.3 384 39.1
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 2.0e-41 174.1 376 41.2
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 2.0e-41 174.1 376 41.2
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 1.3e-40 171.4 369 39.0
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 5.0e-37 159.5 370 37.0
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 2.5e-36 157.1 308 41.2
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 3.4e-33 146.7 207 51.7
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 9.8e-33 145.2 311 38.3
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 6.3e-32 142.5 370 35.7
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 3.5e-30 136.7 230 44.8
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 4.5e-30 136.3 367 35.4
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 1.3e-29 134.8 377 35.3
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 2.3e-29 134.0 393 35.6
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 8.6e-29 132.1 363 35.0
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 3.0e-26 123.6 198 46.0
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 3.0e-26 123.6 365 33.2
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 1.3e-24 118.2 368 33.2
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.1e-23 115.2 341 31.7
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.6e-21 105.5 68 75.0
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.9e-20 104.4 68 73.5
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.5e-20 104.0 68 73.5
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-19 101.3 68 72.1
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-19 101.3 68 72.1
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 4.7e-19 99.8 123 51.2
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.1e-19 99.4 61 78.7
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.8e-18 97.8 68 70.6
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.0e-18 96.7 68 70.6
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 2.4e-15 87.4 68 70.6
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 3.0e-13 80.5 48 79.2
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.0e-13 79.7 50 78.0
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 5.6e-12 76.3 143 39.9
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.8e-10 71.2 65 58.5
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 1.2e-09 68.6 210 31.0
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 1.5e-09 68.2 87 44.8
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 1.7e-08 64.7 68 57.4
SMO361G0449 Selaginella moellendorffii HOM05D063101 ORTHO05D007952 8.3e-08 62.4 212 29.7


User provided reference genes

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