Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 2232.6 1171 100.0
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 2173.7 1171 96.8
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 2086.6 1172 93.3
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 2072.4 1171 92.4
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2072.0 1171 92.4
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2070.0 1171 92.3
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2064.3 1171 92.0
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 2060.0 1166 91.3
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 2056.6 1166 91.3
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 2053.9 1172 91.0
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2051.6 1168 91.0
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 2035.0 1172 90.0
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 2032.7 1171 89.4
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 2027.7 1174 89.1
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 2023.4 1172 88.8
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 2023.1 1173 89.7
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 2023.1 1174 87.6
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 2022.7 1173 87.1
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2021.1 1166 89.7
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 2019.2 1172 89.3
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 2017.3 1176 89.7
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 2016.1 1172 89.0
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 2011.9 1175 89.6
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2006.5 1175 87.6
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 2006.1 1173 88.2
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 2006.1 1173 87.4
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 2005.3 1172 88.7
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 2003.8 1172 88.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 2003.4 1173 86.5
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 2002.3 1173 86.1
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 2001.9 1173 88.7
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 2001.9 1173 88.2
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1993.4 1172 87.9
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1989.2 1172 88.0
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1988.8 1172 87.6
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1988.8 1172 88.6
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1986.8 1174 88.4
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1986.1 1172 86.9
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1986.1 1172 86.9
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1985.7 1173 85.9
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1985.3 1172 87.3
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1985.3 1173 86.7
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1981.5 1173 87.3
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1979.9 1177 86.5
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1979.5 1202 86.4
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1979.5 1172 87.5
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1974.9 1172 87.1
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1974.1 1175 86.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1973.0 1172 86.4
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1969.5 1171 86.3
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1968.7 1186 85.2
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1967.2 1172 86.3
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1966.0 1180 86.8
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1964.9 1173 86.3
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1964.5 1204 86.0
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1962.6 1173 88.4
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1958.7 1173 86.2
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1953.3 1174 85.9
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1952.9 1091 90.3
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1952.6 1220 83.0
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1936.8 1169 86.2
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1936.4 1175 85.2
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1936.4 1162 87.1
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1934.8 1173 86.2
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1933.3 1213 83.5
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1932.1 1175 86.1
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1930.6 1175 85.9
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1930.2 1177 85.0
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1929.8 1174 86.1
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1927.5 1181 85.7
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1927.5 1196 86.6
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1926.4 1172 84.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1923.3 1174 84.9
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1921.7 1180 85.3
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1921.4 1172 85.2
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1920.6 1174 84.0
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1920.2 1170 85.0
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1171 84.8
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1914.0 1167 85.4
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1167 85.6
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1167 85.6
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1192 84.3
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1908.3 1167 85.3
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1907.5 1173 82.0
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1889.8 1170 84.7
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1879.4 1099 86.2
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1877.8 1099 85.4
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1863.2 1177 83.6
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1845.1 1336 74.6
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1813.9 1174 78.1
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1800.8 1186 78.2
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1791.9 1174 77.3
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1770.7 1174 77.1
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1753.4 1070 83.6
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1731.1 1179 74.8
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1661.7 1003 85.2
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1650.2 1173 71.1
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1641.3 1174 71.4
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1635.5 1158 77.4
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1619.8 949 87.0
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1590.5 846 96.2
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1467.6 1170 63.8
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1460.7 1168 64.6
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1442.2 838 86.6
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1412.1 1168 62.5
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1399.8 1170 62.1
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1386.3 1188 61.3
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1382.9 800 87.6
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1298.5 797 81.6
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1238.0 796 78.4
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1151.0 695 85.8
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1117.4 928 60.9
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 8.0e-312 1074.7 1201 47.1
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 3.7e-299 1031.9 661 80.0
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 5.2e-293 1011.5 576 91.0
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.6e-289 1000.0 746 72.1
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 8.8e-285 984.2 545 92.8
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 7.5e-284 981.1 599 84.5
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.9e-280 969.1 603 85.1
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.4e-261 907.1 626 74.1
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 9.8e-260 901.0 518 83.6
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 8.1e-222 775.0 488 84.2
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 6.9e-221 771.9 465 81.3
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 3.4e-212 743.0 404 90.1
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 4.1e-157 560.1 357 85.7
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.8e-152 544.7 357 80.7
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 5.6e-114 416.8 377 56.5
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 2.4e-112 411.4 288 72.9
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 4.3e-90 337.4 195 86.2
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 2.2e-65 255.4 168 82.7
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.1e-48 199.9 143 74.8
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 4.7e-44 184.5 116 86.2
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 8.6e-38 163.7 103 86.4
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 5.5e-37 161.0 109 81.7
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.2e-34 153.3 78 91.0
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 5.7e-34 151.0 87 85.1
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.6e-31 142.9 96 80.2
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.0e-18 99.4 82 61.0
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.4e-18 98.6 82 62.2
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 1.7e-17 96.3 84 65.5
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.5e-15 88.6 51 82.4
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.3e-14 86.7 51 78.4
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.7e-14 86.3 51 80.4
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 3.0e-14 85.5 106 63.2
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 4.1e-08 65.1 339 26.5
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 6.6e-06 57.8 37 70.3


User provided reference genes

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