Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 3.6e-49 198.0 104 100.0
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 3.5e-44 181.4 101 89.1
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 9.6e-42 173.3 108 85.2
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.1e-32 141.7 100 73.0
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 4.0e-32 141.4 100 76.0
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 4.0e-32 141.4 100 76.0
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 4.0e-32 141.4 104 72.1
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 4.0e-32 141.4 98 74.5
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 5.3e-32 141.0 100 76.0
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 6.9e-32 140.6 100 74.0
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 9.0e-32 140.2 101 71.3
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 1.2e-31 139.8 103 70.9
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 2.6e-31 138.7 104 73.1
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 4.5e-31 137.9 100 74.0
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.8e-31 137.5 100 74.0
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 5.8e-31 137.5 102 74.5
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 7.6e-31 137.1 100 75.0
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 1.0e-30 136.7 99 72.7
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.2e-30 135.6 105 67.6
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.2e-30 135.6 96 71.9
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 2.9e-30 135.2 100 72.0
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 3.8e-30 134.8 104 69.2
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 4.9e-30 134.4 106 68.9
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 8.4e-30 133.7 99 70.7
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 8.4e-30 133.7 98 72.4
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.4e-30 133.7 98 72.4
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.4e-30 133.7 98 72.4
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 1.1e-29 133.3 99 71.7
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.1e-29 133.3 101 70.3
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 1.9e-29 132.5 106 67.0
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.9e-29 132.5 98 71.4
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 4.2e-29 131.3 96 70.8
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 4.2e-29 131.3 101 71.3
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 4.2e-29 131.3 103 67.0
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.6e-28 129.4 96 71.9
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.6e-28 129.4 99 71.7
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.6e-28 129.4 100 71.0
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.6e-28 129.4 105 67.6
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 4.6e-28 127.9 104 71.2
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 4.6e-28 127.9 96 67.7
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 6.0e-28 127.5 105 65.7
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 7.9e-28 127.1 100 70.0
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 7.9e-28 127.1 99 67.7
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.3e-27 126.3 102 65.7
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.3e-27 126.3 98 69.4
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.3e-27 126.3 100 66.0
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.8e-27 125.9 93 71.0
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 1.8e-27 125.9 100 69.0
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.8e-27 125.9 90 70.0
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.8e-27 125.9 93 66.7
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 2.3e-27 125.6 96 71.9
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 2.3e-27 125.6 99 72.7
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 3.0e-27 125.2 99 67.7
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 3.0e-27 125.2 99 67.7
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 3.9e-27 124.8 97 66.0
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 5.1e-27 124.4 99 65.7
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 8.7e-27 123.6 96 68.8
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 8.7e-27 123.6 97 67.0
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.1e-26 123.2 100 67.0
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.5e-26 122.9 99 68.7
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.9e-26 122.5 104 62.5
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 3.3e-26 121.7 93 72.0
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 3.3e-26 121.7 102 63.7
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 3.3e-26 121.7 99 64.6
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 4.3e-26 121.3 96 69.8
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 4.3e-26 121.3 102 66.7
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 5.7e-26 120.9 92 68.5
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 5.7e-26 120.9 100 68.0
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 9.6e-26 120.2 96 64.6
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 9.6e-26 120.2 96 65.6
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 9.6e-26 120.2 99 64.6
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 1.3e-25 119.8 96 65.6
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 1.3e-25 119.8 98 63.3
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 1.6e-25 119.4 93 66.7
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.6e-25 119.4 103 63.1
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.6e-25 119.4 99 64.6
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 2.1e-25 119.0 99 62.6
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 3.7e-25 118.2 93 68.8
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 4.8e-25 117.9 92 66.3
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 6.2e-25 117.5 93 65.6
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 6.2e-25 117.5 93 65.6
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 8.2e-25 117.1 103 64.1
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 8.2e-25 117.1 96 64.6
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 1.1e-24 116.7 93 64.5
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.1e-24 116.7 103 64.1
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 1.1e-24 116.7 97 62.9
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.4e-24 116.3 93 65.6
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 1.8e-24 115.9 93 64.5
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 1.8e-24 115.9 93 64.5
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.8e-24 115.9 101 63.4
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 3.1e-24 115.2 92 66.3
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 4.1e-24 114.8 92 63.0
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 4.1e-24 114.8 96 65.6
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 1.2e-23 113.2 95 62.1
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.2e-23 113.2 96 60.4
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 1.5e-23 112.8 96 63.5
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 2.0e-23 112.5 100 60.0
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 2.0e-23 112.5 96 67.7
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 3.4e-23 111.7 95 63.2
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 3.4e-23 111.7 99 59.6
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 7.6e-23 110.5 94 61.7
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 1.0e-22 110.2 92 65.2
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 2.2e-22 109.0 94 60.6
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.9e-22 108.6 89 62.9
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 6.5e-22 107.5 94 60.6
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 4.2e-21 104.8 94 57.4
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 9.3e-21 103.6 92 60.9
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 9.3e-21 103.6 92 60.9
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 9.3e-21 103.6 92 60.9
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.6e-20 102.8 77 74.0
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.6e-20 102.8 77 74.0
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 4.6e-20 101.3 74 67.6
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 4.6e-20 101.3 92 62.0
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 1.0e-19 100.1 82 61.0
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 1.1e-18 96.7 136 49.3
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.5e-18 95.5 104 51.9
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 7.4e-18 94.0 77 62.3
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 2.2e-17 92.4 75 65.3
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 2.8e-17 92.0 76 65.8
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 3.7e-17 91.7 102 50.0
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 6.3e-17 90.9 70 67.1
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 1.8e-16 89.4 98 56.1
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 2.4e-16 89.0 78 61.5
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 3.1e-16 88.6 104 50.0
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 3.1e-16 88.6 77 62.3
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 9.0e-16 87.0 104 49.0
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.7e-14 82.8 84 51.2
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 8.5e-14 80.5 87 55.2
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.9e-13 79.3 91 49.5
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 5.5e-13 77.8 91 51.6
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 3.6e-12 75.1 87 54.0
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 7.9e-12 73.9 67 59.7
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 7.9e-12 73.9 91 46.2
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 2.3e-11 72.4 62 58.1
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 2.3e-11 72.4 51 64.7
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 6.7e-11 70.9 57 57.9
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 2.5e-10 68.9 69 55.1
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 3.3e-10 68.6 66 57.6
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 9.7e-10 67.0 62 54.8
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 9.7e-10 67.0 61 54.1
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 2.8e-09 65.5 85 48.2
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 3.7e-09 65.1 60 55.0
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 2.0e-07 59.3 61 54.1
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 5.9e-07 57.8 34 79.4
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.7e-06 56.2 71 43.7


User provided reference genes

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