Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 9.9e-77 290.0 146 100.0
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 1.0e-49 200.3 148 74.3
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 3.1e-46 188.7 144 71.5
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 6.5e-44 181.0 148 68.9
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.1e-43 180.3 148 68.9
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.4e-43 179.9 148 68.9
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 1.4e-43 179.9 148 68.9
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 2.1e-42 176.0 150 66.7
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 4.6e-42 174.9 148 67.6
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 6.0e-42 174.5 140 65.0
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 1.1e-40 170.2 140 65.7
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 7.4e-40 167.5 143 64.3
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 7.4e-40 167.5 143 64.3
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 3.1e-38 162.2 149 58.4
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 1.0e-36 157.1 135 60.7
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 1.7e-36 156.4 147 61.2
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 2.2e-36 156.0 141 63.1
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 2.9e-36 155.6 151 58.9
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 1.9e-35 152.9 145 55.9
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 3.2e-35 152.1 146 55.5
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 3.2e-35 152.1 145 56.6
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 5.5e-35 151.4 140 57.9
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 7.2e-35 151.0 147 57.8
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 1.8e-33 146.4 141 58.9
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 2.3e-33 146.0 146 55.5
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 3.0e-33 145.6 155 56.1
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 3.0e-33 145.6 139 59.0
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 5.1e-33 144.8 134 57.5
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 6.7e-33 144.4 131 57.3
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 8.8e-33 144.1 146 54.8
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 1.5e-32 143.3 148 56.1
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 1.9e-32 142.9 145 55.2
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 2.5e-32 142.5 154 51.9
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 2.5e-32 142.5 145 57.2
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 2.5e-32 142.5 149 54.4
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 4.3e-32 141.7 149 56.4
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 5.7e-32 141.4 146 58.2
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 7.4e-32 141.0 146 53.4
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 9.7e-32 140.6 152 52.0
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 1.7e-31 139.8 123 59.3
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 1.7e-31 139.8 134 56.7
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 1.4e-30 136.7 144 55.6
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.8e-30 136.3 140 57.9
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 2.4e-30 136.0 141 56.0
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 6.9e-30 134.4 130 59.2
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 9.1e-30 134.0 137 56.2
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 1.5e-29 133.3 143 55.2
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 1.5e-29 133.3 138 55.8
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 3.4e-29 132.1 150 52.7
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 3.4e-29 132.1 143 53.8
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 1.3e-28 130.2 130 53.8
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 2.9e-28 129.0 132 53.8
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 2.9e-28 129.0 142 52.1
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 5.0e-28 128.3 147 52.4
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 5.0e-28 128.3 157 51.0
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 8.5e-28 127.5 167 47.3
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 1.1e-27 127.1 150 51.3
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 1.1e-27 127.1 157 50.3
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 1.4e-27 126.7 128 56.2
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 1.9e-27 126.3 151 49.0
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 2.5e-27 125.9 143 51.7
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 5.5e-27 124.8 155 50.3
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 7.2e-27 124.4 137 53.3
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 9.4e-27 124.0 147 51.0
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 9.4e-27 124.0 136 53.7
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 1.2e-26 123.6 144 50.0
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 1.2e-26 123.6 104 63.5
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 2.1e-26 122.9 128 54.7
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 2.7e-26 122.5 141 53.2
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 3.6e-26 122.1 151 48.3
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 1.4e-25 120.2 151 51.7
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 3.0e-25 119.0 107 58.9
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 6.7e-25 117.9 138 51.4
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 3.3e-24 115.5 123 55.3
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 4.4e-24 115.2 120 55.8
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 7.4e-24 114.4 108 57.4
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 1.1e-22 110.5 136 49.3
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.4e-22 110.2 121 53.7
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 4.5e-21 105.1 115 52.2
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 7.7e-21 104.4 128 51.6
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 7.7e-21 104.4 129 50.4
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.0e-20 104.0 132 47.7
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 3.8e-20 102.1 142 42.3
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 8.5e-20 100.9 131 45.8
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 1.4e-19 100.1 143 42.0
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 1.9e-19 99.8 146 41.1
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 2.5e-19 99.4 144 41.0
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 2.5e-19 99.4 144 41.0
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 4.2e-19 98.6 144 41.0
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 4.2e-19 98.6 126 43.7
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 4.2e-19 98.6 124 44.4
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 4.2e-19 98.6 137 43.1
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 5.5e-19 98.2 124 45.2
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 5.5e-19 98.2 147 44.2
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 5.5e-19 98.2 147 44.2
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 1.6e-18 96.7 131 42.7
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.6e-18 96.7 148 43.9
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 2.7e-18 95.9 139 44.6
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 3.6e-18 95.5 148 43.2
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 4.7e-18 95.1 126 42.9
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 6.7e-17 91.3 134 44.8
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 8.8e-17 90.9 126 40.5
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 4.8e-15 85.1 79 58.2
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 1.4e-14 83.6 80 57.5
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 2.4e-14 82.8 144 40.3
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 4.1e-14 82.0 145 37.2
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 4.1e-14 82.0 73 56.2
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 3.5e-13 79.0 172 36.6
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 9.4e-11 70.9 93 46.2
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 1.7e-07 60.1 116 34.5
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 2.8e-07 59.3 110 39.1
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 6.3e-07 58.2 94 43.6
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 1.1e-06 57.4 98 39.8
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 1.4e-06 57.0 109 38.5
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.8e-06 56.6 123 38.2
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 2.4e-06 56.2 87 41.4
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 5.3e-06 55.1 130 33.8
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 7.0e-06 54.7 98 38.8


User provided reference genes

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