Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 0.0e+00 1236.1 638 100.0
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 1.8e-215 753.1 578 73.7
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.6e-206 722.6 642 65.0
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.9e-204 716.5 616 66.4
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 1.5e-201 706.8 642 64.0
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.8e-200 701.8 576 68.2
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.8e-197 692.2 635 63.6
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 6.7e-194 681.4 541 71.2
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 4.8e-160 568.9 676 55.2
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 3.2e-156 556.2 553 59.5
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 2.0e-153 547.0 565 57.5
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.2e-147 527.7 566 56.0
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.6e-147 527.3 545 57.1
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.6e-147 526.2 566 55.1
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 3.3e-145 519.6 569 56.1
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 5.3e-143 512.3 567 54.3
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 2.7e-142 510.0 565 54.9
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 4.2e-140 502.7 625 52.8
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 5.5e-140 502.3 569 54.0
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 2.7e-139 500.0 577 54.1
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 1.5e-137 494.2 607 51.6
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 2.6e-137 493.4 581 55.2
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 3.4e-137 493.0 568 52.6
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 6.3e-136 488.8 591 52.5
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 1.6e-134 484.2 569 52.7
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 4.5e-134 482.6 591 52.6
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.3e-133 481.1 581 54.4
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 3.3e-132 476.5 569 52.2
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 1.6e-131 474.2 560 52.7
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 3.6e-131 473.0 579 53.4
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 4.7e-131 472.6 604 50.5
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.3e-130 470.3 559 52.2
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.0e-129 467.2 554 55.2
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 5.7e-129 465.7 587 50.9
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 2.8e-128 463.4 553 51.4
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 2.4e-127 460.3 601 48.9
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 1.6e-126 457.6 594 49.5
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 2.7e-126 456.8 593 49.6
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 1.3e-125 454.5 581 49.7
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 1.3e-125 454.5 664 46.2
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 6.6e-125 452.2 584 50.0
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 4.7e-123 446.0 620 48.1
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 3.1e-122 443.4 625 48.2
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 1.2e-121 441.4 511 52.6
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 2.7e-118 430.3 620 47.3
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 6.6e-117 425.6 560 47.7
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.1e-116 424.9 666 46.2
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 2.0e-113 414.1 523 48.4
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 4.4e-113 412.9 549 49.4
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 8.6e-109 398.7 376 60.1
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.9e-103 380.9 527 46.7
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 4.1e-103 379.8 439 52.2
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 4.6e-102 376.3 548 45.6
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 5.6e-100 369.4 467 52.2
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 4.7e-99 366.3 377 55.4
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 7.1e-95 352.4 535 44.9
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 3.2e-87 327.0 393 53.7
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 2.1e-83 314.3 414 49.8
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 8.1e-83 312.4 205 77.6
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 1.3e-80 305.1 525 42.3
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 4.8e-75 286.6 566 38.2
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 1.4e-71 275.0 440 45.7
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 8.2e-67 259.2 241 57.7
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 5.3e-66 256.5 568 36.6
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 6.9e-66 256.1 205 65.4
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.3e-61 241.9 264 52.3
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 5.7e-60 236.5 247 53.0
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.1e-52 212.2 272 46.0
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 5.3e-50 203.4 396 41.2
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 1.4e-47 195.3 407 42.0
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 6.1e-46 189.9 239 51.9
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 2.0e-44 184.9 155 62.6
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 8.8e-37 159.5 164 50.6
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 8.2e-35 152.9 232 40.9
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.1e-34 149.4 222 39.6
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 2.1e-30 138.3 256 39.1
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 8.0e-30 136.3 224 34.4
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 8.0e-30 136.3 224 34.4
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 6.8e-29 133.3 479 31.5
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.7e-28 130.2 224 33.9
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.4e-26 124.8 226 34.5
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.6e-25 122.1 228 33.3
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 6.1e-22 110.2 135 54.1
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.8e-21 108.6 314 28.3
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 2.3e-21 108.2 476 27.9
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 8.3e-19 99.8 451 30.4
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 4.1e-18 97.4 231 30.7
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 1.2e-17 95.9 115 54.8
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.8e-13 82.0 244 30.3
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 4.0e-13 80.9 143 37.1
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 4.0e-13 80.9 285 26.7
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 5.2e-13 80.5 231 28.1
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 6.8e-13 80.1 244 29.9
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 6.8e-13 80.1 266 25.9
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 3.4e-12 77.8 244 29.5
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 9.8e-12 76.3 256 25.4
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.3e-11 75.9 266 26.7
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.7e-11 75.5 241 27.0
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 2.8e-11 74.7 266 25.9
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 3.7e-11 74.3 354 24.6
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 3.7e-11 74.3 245 26.9
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 4.9e-11 73.9 247 28.3
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 4.9e-11 73.9 221 27.6
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 6.3e-11 73.6 218 28.0
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 1.1e-10 72.8 256 27.0
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.1e-10 72.8 256 27.0
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 3.2e-10 71.2 242 27.7
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 3.2e-10 71.2 240 26.2
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 3.2e-10 71.2 240 26.2
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 4.1e-10 70.9 221 28.1
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 5.4e-10 70.5 244 27.5
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 7.0e-10 70.1 256 26.6
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 9.2e-10 69.7 220 25.0
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 9.2e-10 69.7 206 28.6
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 1.2e-09 69.3 222 26.6
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 1.6e-09 68.9 383 24.8
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 1.6e-09 68.9 222 26.1
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 2.7e-09 68.2 279 26.5
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 3.5e-09 67.8 256 26.2
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 3.5e-09 67.8 269 26.4
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 3.5e-09 67.8 256 25.4
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 4.5e-09 67.4 238 25.2
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 5.9e-09 67.0 256 25.4
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 1.3e-08 65.9 221 24.4
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 1.3e-08 65.9 201 27.4
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 1.7e-08 65.5 256 25.8
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 2.3e-08 65.1 388 23.5
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.9e-08 64.7 339 24.5
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 3.9e-08 64.3 256 26.6
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 3.9e-08 64.3 272 26.1
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.5e-07 62.4 212 26.4
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 1.5e-07 62.4 220 25.0
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.5e-07 62.4 292 22.9
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.5e-07 62.4 292 22.9
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.9e-07 62.0 256 25.4
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.9e-07 62.0 341 23.8
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 2.5e-07 61.6 367 25.6
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 3.3e-07 61.2 507 22.5
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 3.3e-07 61.2 238 26.5
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 3.3e-07 61.2 245 24.1
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 4.3e-07 60.8 256 25.4
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 4.3e-07 60.8 256 24.6
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 5.6e-07 60.5 68 51.5
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 7.3e-07 60.1 221 25.8
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 9.5e-07 59.7 240 25.4
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 1.2e-06 59.3 203 25.6


User provided reference genes

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