Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 6.9e-203 710.3 331 100.0
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 5.9e-178 627.5 329 87.2
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 6.1e-175 617.5 329 83.6
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 6.1e-175 617.5 329 83.6
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.0e-174 616.7 329 83.9
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.0e-174 616.7 329 83.9
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 5.0e-169 597.8 327 82.6
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 1.3e-164 583.2 324 78.7
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 2.9e-164 582.0 324 79.3
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 3.7e-164 581.6 323 78.3
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 8.3e-164 580.5 323 78.3
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 2.7e-162 575.5 320 79.1
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 4.6e-162 574.7 320 79.7
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 4.6e-162 574.7 320 79.4
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 5.0e-161 571.2 323 78.6
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 6.6e-161 570.9 323 78.0
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 1.9e-160 569.3 324 77.8
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 7.3e-160 567.4 324 75.6
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 7.3e-160 567.4 324 76.5
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 1.2e-159 566.6 325 76.9
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 1.8e-158 562.8 323 77.7
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 2.3e-158 562.4 318 76.7
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 1.5e-157 559.7 310 77.7
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 3.4e-157 558.5 321 77.3
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 7.5e-157 557.4 318 77.0
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 2.2e-156 555.8 321 75.7
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 3.7e-156 555.1 319 74.6
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 6.4e-156 554.3 318 76.4
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 1.1e-155 553.5 320 76.9
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 1.4e-155 553.1 320 76.2
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.4e-155 553.1 324 75.9
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 3.2e-155 552.0 319 75.5
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 4.1e-155 551.6 319 77.4
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 4.1e-155 551.6 319 76.2
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 4.1e-155 551.6 321 77.3
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 1.2e-154 550.1 319 76.5
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.2e-154 550.1 311 77.8
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.6e-154 549.7 321 75.7
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.6e-154 549.7 321 76.6
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 2.0e-154 549.3 318 76.4
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 3.5e-154 548.5 327 73.4
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 4.6e-154 548.1 318 75.5
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 6.0e-154 547.7 321 75.7
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 7.8e-154 547.4 320 75.6
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 7.8e-154 547.4 322 76.1
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 1.0e-153 547.0 321 76.3
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 2.3e-153 545.8 314 76.4
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 3.0e-153 545.4 320 75.3
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 5.0e-153 544.7 320 75.3
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 8.6e-153 543.9 318 76.1
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 2.5e-152 542.3 320 75.0
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.5e-152 542.3 322 76.1
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 7.3e-152 540.8 313 75.4
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 9.5e-152 540.4 318 75.5
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 1.6e-151 539.7 320 75.6
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 2.8e-151 538.9 320 75.0
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 4.7e-151 538.1 321 75.1
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 1.1e-150 537.0 319 74.6
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 1.1e-150 537.0 320 75.0
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 1.4e-150 536.6 318 74.2
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 1.8e-150 536.2 319 74.3
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 1.8e-150 536.2 321 74.5
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 4.0e-150 535.0 315 75.6
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 4.0e-150 535.0 314 75.5
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 5.2e-150 534.6 319 73.7
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 8.9e-150 533.9 327 72.8
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 8.9e-150 533.9 318 73.9
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 2.0e-149 532.7 314 73.9
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 2.6e-149 532.3 318 73.9
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 4.4e-149 531.6 315 74.9
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 7.5e-149 530.8 318 74.5
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 2.2e-148 529.3 314 73.2
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 2.2e-148 529.3 318 73.6
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.9e-148 528.9 318 73.6
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 2.9e-148 528.9 313 74.4
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 3.7e-148 528.5 315 74.0
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 2.4e-147 525.8 317 73.8
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.2e-147 525.4 318 73.0
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 3.2e-147 525.4 324 72.8
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 3.2e-147 525.4 322 74.2
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 1.6e-146 523.1 320 72.8
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 2.1e-146 522.7 315 73.7
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 4.6e-146 521.5 320 72.2
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 6.0e-146 521.2 319 71.2
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 1.3e-145 520.0 320 70.3
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.3e-145 519.2 318 71.4
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 8.6e-145 517.3 318 72.6
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 1.1e-144 516.9 320 72.8
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 1.1e-144 516.9 320 72.5
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 2.5e-144 515.8 318 73.3
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 5.6e-144 514.6 314 72.6
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 9.5e-144 513.8 314 71.7
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.1e-143 512.7 304 75.0
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.7e-143 511.5 305 74.4
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 1.1e-142 510.4 320 70.3
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 2.3e-142 509.2 319 67.4
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 2.3e-142 509.2 320 71.6
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 2.3e-142 509.2 315 71.7
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 4.0e-142 508.4 321 69.2
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 1.5e-141 506.5 320 68.8
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 4.4e-141 505.0 307 72.3
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 5.8e-141 504.6 309 71.8
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 7.6e-141 504.2 302 74.5
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 9.9e-141 503.8 301 75.1
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 3.7e-140 501.9 307 72.0
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 5.4e-139 498.0 318 69.2
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 1.6e-138 496.5 309 70.6
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.1e-138 496.1 295 74.2
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 2.7e-138 495.7 319 67.7
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 4.6e-138 495.0 309 70.6
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 4.6e-138 495.0 318 71.1
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 6.0e-138 494.6 307 70.7
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 6.0e-138 494.6 319 69.6
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 1.3e-137 493.4 309 70.2
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 2.3e-137 492.7 307 69.7
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 3.9e-137 491.9 320 67.8
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 6.6e-137 491.1 307 70.0
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 1.1e-136 490.3 309 69.9
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 9.6e-136 487.3 307 68.7
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 9.6e-136 487.3 309 69.9
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 1.6e-135 486.5 304 67.8
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 1.2e-133 480.3 319 69.3
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.6e-127 459.9 328 63.1
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 2.1e-127 459.5 309 67.3
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 2.8e-127 459.1 273 71.8
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 3.6e-127 458.8 289 70.9
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 3.1e-126 455.7 319 64.9
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 6.9e-126 454.5 328 62.2
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 2.7e-122 442.6 304 63.5
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 6.0e-122 441.4 318 61.9
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.3e-121 439.5 294 69.0
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.8e-118 429.9 313 62.3
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 5.3e-118 428.3 306 62.7
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 4.9e-116 421.8 318 63.2
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 4.9e-116 421.8 318 63.2
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 1.3e-113 413.7 321 58.6
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 2.5e-107 392.9 218 78.0
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 3.2e-107 392.5 229 73.8
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 9.3e-107 391.0 306 57.8
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 6.7e-105 384.8 296 63.9
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 2.0e-101 373.2 307 57.0
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 6.3e-95 351.7 309 52.8
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 3.8e-84 315.8 274 56.2
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 8.0e-74 281.6 181 70.2
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.8e-73 280.4 308 46.8
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 9.4e-67 258.1 264 48.9
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 3.1e-54 216.5 134 73.9
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.8e-50 203.4 128 66.4
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.6e-48 196.8 113 77.9
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 7.0e-46 188.7 322 33.9
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 6.4e-39 165.6 314 33.1
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 1.2e-32 144.8 244 36.5
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 9.2e-30 135.2 342 28.7
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.0e-28 130.2 95 60.0
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 3.4e-16 90.1 61 70.5
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 6.4e-15 85.9 100 47.0


User provided reference genes

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