Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G161500 Prunus persica HOM05D007617 ORTHO05D007195 8.9e-67 256.9 140 100.0
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 1.0e-46 190.3 135 68.9
MD14G1167200 Malus domestica HOM05D007617 ORTHO05D007195 1.8e-43 179.5 118 72.9
MD02G1049300 Malus domestica HOM05D007617 ORTHO05D007195 2.9e-41 172.2 135 66.7
Haze_07632 Corylus avellana HOM05D007617 ORTHO05D007195 2.3e-30 136.0 146 61.0
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 8.7e-30 134.0 140 60.7
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 4.8e-28 128.3 137 54.0
CANSAT80G0013 Cannabis sativa HOM05D007617 ORTHO05D007195 1.1e-24 117.1 140 55.7
CiPaw.11G014400 Carya illinoinensis HOM05D007617 ORTHO05D007195 1.2e-23 113.6 145 57.2
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.6e-23 113.2 137 49.6
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 4.6e-23 111.7 137 48.9
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 3.0e-22 109.0 137 48.2
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 1.9e-21 106.3 139 50.4
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 2.5e-21 105.9 137 48.2
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 5.6e-21 104.8 137 46.7
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 3.7e-20 102.1 138 45.7
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 5.8e-18 94.7 137 47.4
Duzib205G1108 Durio zibethinus HOM05D011792 ORTHO05D007195 1.0e-17 94.0 146 50.0
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.1e-16 90.5 140 40.7
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 1.4e-16 90.1 145 44.1
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 1.6e-15 86.7 143 43.4
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 2.1e-15 86.3 149 42.3
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 2.1e-15 86.3 137 40.9
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 1.8e-14 83.2 139 41.0
Gohir.D12G189700 Gossypium hirsutum HOM05D011792 ORTHO05D007195 5.1e-14 81.6 148 44.6
Nn3g16639 Nelumbo nucifera HOM05D007617 ORTHO05D007195 5.1e-14 81.6 138 48.6
TWI39G0914 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 5.1e-14 81.6 144 50.7
TAR622G0315 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.9e-13 79.7 138 43.5
Gohir.A07G055100 Gossypium hirsutum HOM05D011792 ORTHO05D007195 2.5e-13 79.3 143 46.2
TWI23G0333 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 5.7e-13 78.2 142 50.0
Nn4g22527 Nelumbo nucifera HOM05D007617 ORTHO05D007195 1.3e-12 77.0 143 45.5
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 1.3e-12 77.0 137 38.7
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 2.8e-12 75.9 139 38.8
THA.LOC109117150 Tarenaya hassleriana HOM05D007617 ORTHO05D007195 3.7e-12 75.5 141 45.4
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 8.2e-12 74.3 139 44.6
Gorai.001G062900 Gossypium raimondii HOM05D011792 ORTHO05D007195 8.2e-12 74.3 143 44.8
Gohir.A12G186700 Gossypium hirsutum HOM05D011792 ORTHO05D007195 1.1e-11 73.9 148 42.6
Gohir.D07G059400 Gossypium hirsutum HOM05D011792 ORTHO05D007195 1.4e-11 73.6 142 43.0
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 1.4e-11 73.6 147 39.5
Cfa007314 Carpinus fangiana HOM05D000615 ORTHO05D007195 3.1e-11 72.4 139 44.6
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 9.0e-11 70.9 138 39.9
Actinidia36140 Actinidia chinensis HOM05D007617 ORTHO05D007195 1.2e-10 70.5 143 43.4
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 3.4e-10 68.9 138 38.4
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 1.3e-09 67.0 137 41.6
Haze_14778 Corylus avellana HOM05D007617 ORTHO05D007195 2.2e-09 66.2 132 42.4
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 2.9e-09 65.9 147 41.5
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 6.5e-09 64.7 138 44.9
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 6.5e-09 64.7 141 38.3
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 1.1e-08 63.9 148 35.1
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 1.1e-08 63.9 137 35.8
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 1.1e-08 63.9 137 35.8
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 1.1e-08 63.9 123 38.2
Gohir.D09G052996 Gossypium hirsutum HOM05D011792 ORTHO05D007195 1.9e-08 63.2 122 35.2
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 3.2e-08 62.4 137 43.1
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 3.2e-08 62.4 140 35.7
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 3.2e-08 62.4 142 39.4
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 5.5e-08 61.6 141 36.2
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 5.5e-08 61.6 137 34.3
Gorai.008G203500 Gossypium raimondii HOM05D011792 ORTHO05D007195 7.2e-08 61.2 117 35.9
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 1.2e-07 60.5 143 42.0
Eucgr.K02773 Eucalyptus grandis HOM05D007617 ORTHO05D007195 1.6e-07 60.1 141 40.4
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 1.6e-07 60.1 138 35.5
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 2.1e-07 59.7 144 31.9
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 1.0e-06 57.4 136 33.8
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 1.3e-06 57.0 143 35.7
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 1.3e-06 57.0 145 41.4
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 1.8e-06 56.6 152 32.9
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 2.3e-06 56.2 151 35.1
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 3.0e-06 55.8 137 34.3
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 3.9e-06 55.5 142 38.0
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 5.1e-06 55.1 137 35.0
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 5.1e-06 55.1 137 35.0
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 5.1e-06 55.1 120 38.3
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 5.1e-06 55.1 142 36.6
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 5.1e-06 55.1 137 35.0
Gohir.A10G059400 Gossypium hirsutum HOM05D011792 ORTHO05D007195 6.7e-06 54.7 106 34.0
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 8.7e-06 54.3 142 37.3


User provided reference genes

Program Settings