Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 0.0e+00 1318.9 648 100.0
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 0.0e+00 1169.8 650 87.8
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 0.0e+00 1135.9 651 85.9
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 0.0e+00 1112.4 646 84.1
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 5.5e-305 1050.4 646 78.9
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.2e-302 1042.7 648 77.9
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.0e-302 1042.0 651 78.3
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 7.3e-289 996.9 649 75.0
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.6e-288 994.6 648 76.1
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 4.1e-284 981.1 651 71.1
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 9.2e-284 979.9 648 73.9
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 4.6e-283 977.6 678 71.8
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 2.7e-275 951.8 643 69.5
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.7e-274 949.1 642 69.8
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 6.2e-272 940.6 650 69.7
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 4.0e-271 937.9 657 71.2
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 2.2e-269 932.2 657 70.9
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 1.1e-268 929.9 652 69.2
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 7.1e-268 927.2 653 70.0
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.3e-266 922.2 647 69.1
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 5.6e-265 917.5 644 69.7
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 6.2e-264 914.1 645 68.7
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 1.8e-263 912.5 653 68.1
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 2.4e-263 912.1 649 68.0
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.7e-261 906.0 653 68.3
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 1.7e-261 906.0 644 67.7
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 2.2e-261 905.6 645 68.4
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 4.9e-261 904.4 645 68.1
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 6.4e-261 904.0 646 67.8
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.9e-260 902.5 653 66.9
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.6e-259 899.4 646 67.3
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 1.7e-258 896.0 645 67.4
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 1.7e-258 896.0 652 68.6
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 3.9e-258 894.8 647 67.2
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.1e-257 893.3 608 69.2
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 4.3e-257 891.3 648 68.2
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.6e-256 889.4 652 66.6
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 2.8e-256 888.6 647 67.2
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.1e-255 886.7 645 67.0
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 5.3e-255 884.4 645 68.5
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 6.9e-255 884.0 658 66.0
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.2e-254 883.2 648 66.4
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 9.9e-254 880.2 647 68.8
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 9.9e-254 880.2 648 67.0
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 2.9e-253 878.6 648 66.5
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 4.2e-252 874.8 659 65.3
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 7.1e-252 874.0 647 65.5
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 2.7e-251 872.1 628 69.7
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 4.6e-251 871.3 659 65.6
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 6.0e-251 870.9 648 66.5
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 6.0e-251 870.9 620 67.6
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 1.0e-250 870.2 648 67.3
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 2.3e-250 869.0 645 67.1
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 2.3e-250 869.0 645 67.1
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 3.0e-250 868.6 653 65.8
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 6.7e-250 867.5 644 66.5
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 2.5e-249 865.5 652 67.2
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 4.8e-248 861.3 646 66.7
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.1e-247 860.1 649 64.9
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 3.1e-247 858.6 650 62.6
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 1.3e-245 853.2 652 64.9
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 1.1e-244 850.1 655 63.8
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.2e-244 848.6 651 64.5
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 3.9e-242 841.6 653 64.5
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.9e-241 839.3 657 63.2
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 3.3e-241 838.6 652 64.3
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 4.3e-241 838.2 655 63.1
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 1.3e-240 836.6 538 74.5
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 2.8e-240 835.5 655 62.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.1e-239 833.6 647 63.7
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 5.3e-239 831.2 646 63.5
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 9.0e-239 830.5 654 63.3
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.2e-238 830.1 612 66.8
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 2.2e-237 825.9 657 62.3
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 2.9e-237 825.5 655 62.4
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 6.5e-237 824.3 649 63.3
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 8.4e-237 823.9 663 62.3
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 4.6e-235 818.1 647 64.0
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 3.1e-231 805.4 656 61.3
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 5.1e-226 788.1 673 60.3
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 5.5e-220 768.1 653 58.7
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.7e-216 756.5 649 56.7
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 2.8e-216 755.7 645 58.9
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 2.9e-213 745.7 647 57.3
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 2.9e-213 745.7 575 63.3
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 2.8e-208 729.2 643 56.3
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 3.2e-196 689.1 502 67.3
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 7.7e-190 667.9 486 68.1
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.1e-188 664.1 574 61.1
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.8e-187 659.4 617 56.9
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.0e-186 656.0 589 54.7
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 2.8e-184 649.4 676 51.3
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.3e-173 614.0 657 50.8
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 1.3e-165 587.4 593 54.1
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 3.9e-165 585.9 477 60.6
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.9e-144 516.5 655 42.9
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.3e-141 506.9 640 45.0
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 9.0e-138 495.0 625 43.7
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.8e-130 470.7 540 49.1
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 6.0e-126 455.7 254 84.6
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.2e-113 414.8 361 58.2
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 5.9e-113 412.5 417 49.4
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.0e-105 387.5 425 47.3
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 2.6e-105 387.1 483 45.1
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 3.9e-101 373.2 637 38.9
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 6.3e-99 365.9 268 69.0
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 9.1e-98 362.1 296 63.2
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 2.3e-93 347.4 345 52.2
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 2.2e-91 340.9 178 84.8
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 7.2e-79 299.3 197 71.6
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 1.6e-78 298.1 214 67.8
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 4.3e-55 220.3 170 64.1
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 5.2e-53 213.4 104 91.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 1.3e-51 208.8 106 84.9
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 2.8e-46 191.0 495 34.7
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 2.4e-37 161.4 137 62.0
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 1.7e-35 155.2 200 42.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.6e-33 148.7 178 44.4
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 3.5e-33 147.5 154 53.2
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 2.0e-28 131.7 83 72.3
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 4.4e-28 130.6 85 74.1
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.2e-26 124.4 83 69.9
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 6.0e-25 120.2 58 86.2
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.2e-20 105.9 100 51.0
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 4.6e-17 94.0 72 61.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 8.7e-16 89.7 79 57.0
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 1.5e-15 89.0 79 57.0
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 1.9e-15 88.6 79 55.7
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 7.4e-15 86.7 79 55.7
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 9.6e-15 86.3 79 54.4
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 3.7e-14 84.3 79 55.7
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 2.2e-11 75.1 93 47.3
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 8.4e-11 73.2 75 52.0
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 1.4e-10 72.4 92 51.1
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 3.5e-09 67.8 96 47.9
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 3.0e-08 64.7 146 35.6
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 3.0e-08 64.7 96 40.6
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 1.1e-07 62.8 111 34.2


User provided reference genes

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