Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 9.2e-194 680.2 396 100.0
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 7.5e-111 404.8 398 67.1
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 5.8e-79 298.9 401 53.4
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.1e-75 285.8 436 50.0
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 6.6e-75 285.4 438 52.3
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 4.3e-74 282.7 422 50.2
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 2.8e-73 280.0 422 49.5
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 2.8e-73 280.0 431 51.5
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 3.6e-73 279.6 431 49.4
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 2.3e-72 276.9 393 52.7
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.3e-72 276.9 431 49.0
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 2.3e-72 276.9 428 49.1
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 4.0e-72 276.2 413 51.3
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 4.0e-72 276.2 405 53.1
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 6.8e-72 275.4 426 50.2
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 3.4e-71 273.1 395 53.9
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.8e-71 272.3 433 49.9
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.3e-70 271.2 428 50.2
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 2.9e-70 270.0 409 48.7
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 6.4e-70 268.9 433 49.7
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 3.2e-69 266.5 419 50.1
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 5.4e-69 265.8 415 50.4
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.1e-69 265.4 409 51.8
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.1e-69 265.4 408 50.7
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 9.2e-69 265.0 422 47.6
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.6e-68 264.2 402 48.3
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 2.7e-68 263.5 386 51.3
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 3.5e-68 263.1 387 51.2
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 3.0e-67 260.0 348 50.0
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 3.0e-67 260.0 424 48.3
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 6.6e-67 258.8 431 48.3
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 8.6e-67 258.5 435 47.8
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 3.3e-66 256.5 418 47.4
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 4.3e-66 256.1 403 45.4
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 9.5e-66 255.0 387 47.5
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.6e-65 254.2 404 47.5
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 2.1e-65 253.8 423 48.2
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 2.1e-65 253.8 417 49.2
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 3.6e-65 253.1 423 47.8
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 8.1e-65 251.9 459 44.2
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 8.9e-64 248.4 432 46.1
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 1.5e-63 247.7 436 47.5
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 2.6e-63 246.9 411 50.4
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.6e-63 246.9 408 46.8
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 2.6e-63 246.9 457 43.5
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 3.4e-63 246.5 396 45.7
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 1.3e-62 244.6 348 50.9
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.2e-62 243.8 427 44.3
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 2.9e-62 243.4 390 47.2
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 3.8e-62 243.0 431 44.8
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 6.4e-62 242.3 402 49.0
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 8.4e-62 241.9 338 50.0
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 1.4e-61 241.1 390 47.4
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 1.4e-61 241.1 325 50.5
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.9e-61 240.7 390 47.9
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 3.2e-61 240.0 414 46.9
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.4e-61 239.2 409 49.4
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 7.1e-61 238.8 374 49.5
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.2e-60 238.0 417 47.2
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 2.7e-60 236.9 431 45.9
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 4.6e-60 236.1 250 58.4
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 7.8e-60 235.3 401 47.6
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 3.9e-59 233.0 351 46.2
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 1.5e-58 231.1 389 47.8
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.9e-58 230.7 412 45.6
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 5.6e-58 229.2 364 47.3
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 1.3e-57 228.0 387 42.4
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 1.1e-56 224.9 399 48.1
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.4e-56 224.6 441 41.5
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 1.8e-56 224.2 341 45.5
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 4.0e-56 223.0 422 42.9
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 6.9e-56 222.2 347 49.3
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.3e-54 218.0 355 44.2
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 2.2e-54 217.2 386 45.9
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 2.2e-54 217.2 414 40.1
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 2.2e-54 217.2 330 47.6
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 2.9e-54 216.9 427 42.9
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 1.4e-53 214.5 397 49.4
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.9e-53 214.2 367 46.9
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 4.2e-53 213.0 348 49.1
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 7.1e-53 212.2 324 48.8
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 9.3e-53 211.8 318 45.9
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 1.6e-52 211.1 406 39.9
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 3.9e-51 206.5 528 39.2
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 6.6e-51 205.7 391 45.0
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 3.3e-50 203.4 266 50.0
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 3.6e-49 199.9 280 47.5
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 2.4e-48 197.2 387 43.9
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.4e-48 197.2 413 41.6
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.5e-47 194.5 374 44.7
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.5e-47 194.5 324 44.4
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 2.6e-47 193.7 373 42.9
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 2.6e-47 193.7 373 43.7
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 4.5e-47 193.0 320 45.0
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 5.8e-47 192.6 368 41.0
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 9.9e-47 191.8 429 39.9
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 1.4e-45 188.0 326 45.4
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 9.3e-45 185.3 270 44.8
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 1.6e-44 184.5 332 41.3
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.6e-44 184.5 332 41.3
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.6e-44 184.5 394 43.7
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 2.7e-44 183.7 377 46.4
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 2.7e-44 183.7 244 50.4
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.3e-43 181.4 326 47.2
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 5.1e-43 179.5 276 47.8
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 6.7e-43 179.1 378 40.7
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.5e-42 177.9 380 43.2
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 1.6e-41 174.5 402 39.8
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 1.1e-40 171.8 378 42.1
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.1e-40 171.8 243 47.7
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 2.0e-39 167.5 389 42.2
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 3.9e-35 153.3 233 44.6
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 5.7e-34 149.4 365 37.5
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 2.8e-33 147.1 242 44.2
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 8.2e-33 145.6 254 46.9
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 1.4e-32 144.8 332 38.9
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.6e-31 140.6 386 40.2
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.8e-27 127.9 314 36.6
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 3.0e-27 127.1 378 38.6
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 5.1e-27 126.3 341 34.3
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.5e-23 114.8 270 37.4
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 9.4e-21 105.5 220 40.0
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.0e-19 102.1 147 46.3
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 2.0e-18 97.8 146 47.3
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 4.8e-17 93.2 149 44.3
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.5e-15 86.7 88 60.2
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 3.0e-11 73.9 87 50.6
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 3.9e-11 73.6 91 49.5
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 1.1e-08 65.5 242 31.4
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 1.4e-08 65.1 126 38.1
Cre04.g221350 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 7.0e-08 62.8 229 35.8
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.9e-07 59.7 139 36.0
Lsat_1_v5_gn_4_93920 Lactuca sativa HOM05D004981 ORTHO05D005635 7.7e-07 59.3 141 46.1
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 2.2e-06 57.8 69 44.9
Lsat_1_v5_gn_5_14961 Lactuca sativa HOM05D004981 ORTHO05D005635 2.2e-06 57.8 140 37.9
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 3.8e-06 57.0 109 40.4


User provided reference genes

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