Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 0.0e+00 1208.7 650 100.0
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 4.1e-292 1007.7 656 85.4
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 4.9e-253 877.9 611 80.5
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.1e-251 872.5 615 79.8
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 2.1e-251 872.5 610 81.6
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.0e-250 870.2 652 76.5
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 1.4e-247 859.8 623 77.5
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.4e-244 849.7 614 78.3
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 1.3e-242 843.2 639 72.9
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.1e-239 833.6 653 73.8
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.1e-239 833.6 612 71.2
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 2.4e-239 832.4 628 75.0
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.5e-238 829.7 612 70.8
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 9.4e-236 820.5 661 69.9
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 4.6e-235 818.1 651 72.4
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 7.4e-233 810.8 650 72.8
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.7e-232 809.7 633 72.8
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.2e-232 809.3 643 72.5
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 6.3e-232 807.7 615 73.5
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.1e-231 807.0 643 72.5
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.4e-231 806.6 643 72.5
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 2.4e-231 805.8 616 70.8
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 2.0e-230 802.7 579 78.1
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 2.0e-230 802.7 611 70.9
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.1e-228 797.0 605 68.4
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.9e-228 796.2 632 71.2
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 1.9e-228 796.2 623 67.7
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.5e-228 795.8 608 70.1
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.5e-228 795.8 608 70.1
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.2e-228 795.0 631 70.8
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 4.2e-228 795.0 648 65.9
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.2e-227 793.5 616 71.9
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 1.2e-227 793.5 614 69.5
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 4.7e-227 791.6 624 68.6
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.1e-225 786.9 607 69.4
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 7.4e-225 784.3 539 75.9
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 6.3e-224 781.2 613 72.3
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 3.1e-223 778.9 528 75.6
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 9.1e-223 777.3 637 71.1
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 4.5e-222 775.0 628 65.6
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 6.5e-221 771.2 671 66.2
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 6.5e-221 771.2 602 67.6
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 1.9e-220 769.6 616 65.9
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 7.2e-220 767.7 633 65.7
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.6e-219 766.5 633 64.1
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.1e-219 766.1 545 73.0
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 2.1e-219 766.1 642 69.5
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 8.0e-219 764.2 623 69.5
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 3.0e-218 762.3 621 65.2
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 5.2e-218 761.5 678 61.7
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 8.8e-218 760.8 564 70.7
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 5.7e-217 758.1 623 64.8
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.3e-216 756.9 618 69.9
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.7e-216 756.5 574 69.0
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 6.3e-216 754.6 578 67.1
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 3.1e-215 752.3 616 64.6
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.5e-212 743.4 636 66.8
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 5.5e-212 741.5 516 77.7
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.8e-210 736.5 579 72.4
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 4.0e-210 735.3 640 65.0
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 2.0e-209 733.0 645 65.3
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 2.6e-209 732.6 644 66.9
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 4.4e-209 731.9 629 62.0
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 7.5e-209 731.1 642 64.0
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 3.7e-208 728.8 542 74.0
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 8.2e-208 727.6 645 64.3
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.4e-207 726.9 648 65.6
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 3.1e-207 725.7 650 65.2
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.2e-206 723.8 614 69.4
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 2.0e-206 723.0 653 63.9
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 2.9e-205 719.2 646 62.1
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 2.5e-204 716.1 622 63.5
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 3.6e-203 712.2 622 62.7
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 4.8e-200 701.8 674 59.9
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.8e-199 699.9 646 64.4
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 2.3e-197 693.0 644 62.7
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.3e-194 682.9 645 63.1
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 7.5e-193 677.9 622 62.5
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 9.2e-191 671.0 452 77.9
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 7.8e-190 667.9 653 61.6
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 3.3e-188 662.5 632 61.2
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 3.6e-187 659.1 632 60.9
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 4.4e-185 652.1 505 73.3
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 1.7e-181 640.2 633 55.5
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 3.3e-180 636.0 635 58.9
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 4.3e-180 635.6 635 58.9
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 3.6e-171 605.9 632 52.4
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 3.4e-169 599.4 616 53.6
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 6.4e-168 595.1 454 69.2
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 7.1e-167 591.7 607 57.3
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 6.2e-163 578.6 467 65.7
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.9e-160 568.9 528 60.2
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 8.4e-152 541.6 364 84.9
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.2e-150 537.7 566 59.5
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 2.1e-142 510.4 622 51.0
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 3.5e-142 509.6 612 50.5
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 1.0e-141 508.1 484 56.2
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 5.3e-138 495.7 397 68.5
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-135 488.0 333 73.3
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 3.5e-134 483.0 618 49.0
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-131 473.8 412 62.6
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 4.8e-131 472.6 360 70.0
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 3.9e-125 453.0 658 42.7
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 6.3e-123 445.7 509 55.0
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.6e-110 404.4 314 65.9
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.0e-96 358.6 537 43.2
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 6.1e-86 322.8 247 71.7
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 9.8e-84 315.5 287 61.3
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.3e-83 312.4 216 72.7
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.0e-74 282.7 195 71.3
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.6e-72 275.8 208 67.8
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.0e-69 266.9 200 83.5
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.3e-67 259.2 201 65.7
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.2e-66 257.3 250 59.6
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.8e-62 244.2 353 43.1
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 2.3e-53 214.5 174 64.9
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 6.8e-53 213.0 157 85.4
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.5e-52 211.8 157 84.7
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.1e-47 195.7 170 62.4
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-45 189.1 125 71.2
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.5e-44 185.3 168 72.0
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 7.1e-42 176.4 173 58.4
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 1.6e-41 175.3 169 65.1
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.5e-41 174.1 244 46.7
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.9e-33 146.4 106 66.0
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-31 142.5 94 76.6
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.6e-31 139.4 97 70.1
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-26 125.6 80 77.5
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 4.6e-25 120.6 145 51.7
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.3e-22 112.5 184 42.9
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 8.1e-22 109.8 78 70.5
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.4e-21 108.2 77 72.7
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 4.5e-20 104.0 306 28.1
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 5.8e-20 103.6 108 54.6
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 7.1e-18 96.7 58 77.6
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 1.2e-17 95.9 72 61.1
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 1.5e-12 79.0 90 48.9
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 2.9e-11 74.7 46 71.7
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.1e-10 72.8 46 69.6
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.1e-10 72.8 46 69.6
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.4e-10 72.4 87 46.0


User provided reference genes

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