Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G155100 Prunus persica HOM05D004515 ORTHO05D006013 2.5e-43 178.3 88 100.0
Prupe.2G249400 Prunus persica HOM05D004515 ORTHO05D006013 1.3e-18 96.3 71 69.0
RcHm_v2.0_Chr1g0370101 Rosa chinensis HOM05D004515 ORTHO05D006013 6.9e-17 90.5 71 64.8
Duzib128G1522 Durio zibethinus HOM05D004515 ORTHO05D006013 1.5e-16 89.4 69 68.1
Peaxi162Scf00825g00122 Petunia axillaris HOM05D004515 ORTHO05D006013 3.4e-16 88.2 69 65.2
Thecc.10G018200 Theobroma cacao HOM05D004515 ORTHO05D006013 3.4e-16 88.2 69 66.7
Cfa001324 Carpinus fangiana HOM05D004515 ORTHO05D006013 4.5e-16 87.8 71 63.4
Haze_17221 Corylus avellana HOM05D004515 ORTHO05D006013 4.5e-16 87.8 71 63.4
Eucgr.J00216 Eucalyptus grandis HOM05D004515 ORTHO05D006013 5.9e-16 87.4 69 63.8
FvH4_7g24400 Fragaria vesca HOM05D004515 ORTHO05D006013 5.9e-16 87.4 71 62.0
FAN06G0292 Fragaria x ananassa HOM05D004515 ORTHO05D006013 5.9e-16 87.4 71 62.0
FAN06G4539 Fragaria x ananassa HOM05D004515 ORTHO05D006013 5.9e-16 87.4 71 62.0
Manes.10G013300 Manihot esculenta HOM05D004515 ORTHO05D006013 5.9e-16 87.4 69 65.2
Solyc06g051730.4 Solanum lycopersicum HOM05D004515 ORTHO05D006013 5.9e-16 87.4 69 63.8
CiPaw.02G192100 Carya illinoinensis HOM05D004515 ORTHO05D006013 7.7e-16 87.0 71 63.4
Duzib114G1023 Durio zibethinus HOM05D004515 ORTHO05D006013 7.7e-16 87.0 69 66.7
FAN01G2906 Fragaria x ananassa HOM05D004515 ORTHO05D006013 1.0e-15 86.7 71 62.0
FAN10G4299 Fragaria x ananassa HOM05D000946 ORTHO05D006013 1.0e-15 86.7 71 62.0
Glyma.18G028000 Glycine max HOM05D004515 ORTHO05D006013 1.0e-15 86.7 74 60.8
MD01G1152400 Malus domestica HOM05D004515 ORTHO05D006013 1.0e-15 86.7 71 63.4
Nitab4.5_0001171g0050 Nicotiana tabacum HOM05D004515 ORTHO05D006013 1.0e-15 86.7 71 63.4
Atru.chr12.26 Acer truncatum HOM05D004515 ORTHO05D006013 1.3e-15 86.3 69 62.3
MD07G1221400 Malus domestica HOM05D004515 ORTHO05D006013 1.3e-15 86.3 71 63.4
CSS0001103 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 1.7e-15 85.9 69 63.8
CSS0009607 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 1.7e-15 85.9 69 63.8
Cpa.g.sc19.178 Carica papaya HOM05D004515 ORTHO05D006013 1.7e-15 85.9 71 62.0
COL.COLO4_25711 Corchorus olitorius HOM05D004515 ORTHO05D006013 1.7e-15 85.9 69 63.8
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 2.2e-15 85.5 69 63.8
QL08p063123 Quercus lobata HOM05D004515 ORTHO05D006013 2.2e-15 85.5 69 63.8
TWI09G1318 Tripterygium wilfordii HOM05D004515 ORTHO05D006013 2.2e-15 85.5 72 61.1
TAR633G2451 Trochodendron aralioides HOM05D004515 ORTHO05D006013 2.2e-15 85.5 69 62.3
Glyma.11G229300 Glycine max HOM05D004515 ORTHO05D006013 2.9e-15 85.1 74 59.5
Gohir.A06G163900 Gossypium hirsutum HOM05D004515 ORTHO05D006013 2.9e-15 85.1 72 61.1
Gohir.D06G169400 Gossypium hirsutum HOM05D004515 ORTHO05D006013 2.9e-15 85.1 72 61.1
Gorai.010G198300 Gossypium raimondii HOM05D004515 ORTHO05D006013 2.9e-15 85.1 72 61.1
Sopen06g017680 Solanum pennellii HOM05D004515 ORTHO05D006013 2.9e-15 85.1 69 62.3
VMungo1383G2049 Vigna mungo HOM05D004515 ORTHO05D006013 2.9e-15 85.1 74 59.5
GSVIVG01032832001 Vitis vinifera HOM05D004515 ORTHO05D006013 2.9e-15 85.1 69 62.3
Ciclev10031189m.g Citrus clementina HOM05D004515 ORTHO05D006013 3.8e-15 84.7 69 62.3
Lj1C955G2 Lonicera japonica HOM05D004515 ORTHO05D006013 3.8e-15 84.7 69 60.9
Phvul.001G242500 Phaseolus vulgaris HOM05D004515 ORTHO05D006013 6.5e-15 84.0 74 58.1
Sc11g0005040 Simmondsia chinensis HOM05D004515 ORTHO05D006013 6.5e-15 84.0 69 59.4
Actinidia29699 Actinidia chinensis HOM05D004515 ORTHO05D006013 8.5e-15 83.6 69 59.4
Aqoxy168s001 Aquilegia oxysepala HOM05D004515 ORTHO05D006013 8.5e-15 83.6 71 57.7
Aqoxy2G00906 Aquilegia oxysepala HOM05D004515 ORTHO05D006013 8.5e-15 83.6 71 57.7
EL10Ac2g04822 Beta vulgaris HOM05D004515 ORTHO05D006013 8.5e-15 83.6 69 60.9
Nitab4.5_0003999g0010 Nicotiana tabacum HOM05D004515 ORTHO05D006013 8.5e-15 83.6 69 62.3
Oeu005845.1 Olea europaea HOM05D004515 ORTHO05D006013 1.1e-14 83.2 69 58.0
Oeu025167.1 Olea europaea HOM05D004515 ORTHO05D006013 1.1e-14 83.2 69 58.0
ClCG11G006170 Citrullus lanatus HOM05D004515 ORTHO05D006013 1.4e-14 82.8 69 59.4
COL.COLO4_25712 Corchorus olitorius HOM05D004515 ORTHO05D006013 1.4e-14 82.8 69 60.9
CsaV3_6G001820 Cucumis sativus L. HOM05D004515 ORTHO05D006013 1.4e-14 82.8 69 59.4
Ca_15120_v3 Cicer arietinum L. HOM05D004515 ORTHO05D006013 1.9e-14 82.4 72 59.7
Dinv10627 Davidia involucrata HOM05D004515 ORTHO05D006013 1.9e-14 82.4 69 62.3
Lj6g0019651 Lotus japonicus HOM05D004515 ORTHO05D006013 1.9e-14 82.4 74 58.1
Ah.16g103480 Amaranthus hybridus HOM05D004515 ORTHO05D006013 2.5e-14 82.0 71 57.7
arahy.Tifrunner.gnm1.ann1.61SRII Arachis hypogaea HOM05D004515 ORTHO05D006013 2.5e-14 82.0 69 58.0
arahy.Tifrunner.gnm1.ann1.RFU602 Arachis hypogaea HOM05D004515 ORTHO05D006013 2.5e-14 82.0 69 58.0
Sed0023990 Sechium edule HOM05D004515 ORTHO05D006013 2.5e-14 82.0 71 56.3
vmacro06973 Vaccinium macrocarpon HOM05D004515 ORTHO05D006013 2.5e-14 82.0 69 58.0
Cc02_g06590 Coffea canephora HOM05D004515 ORTHO05D006013 3.2e-14 81.6 69 60.9
TPR.G16214 Trifolium pratense HOM05D004515 ORTHO05D006013 3.2e-14 81.6 72 58.3
AL4G37730 Arabidopsis lyrata HOM05D004515 ORTHO05D006013 4.2e-14 81.3 69 60.9
AT2G40090 Arabidopsis thaliana HOM05D004515 ORTHO05D006013 4.2e-14 81.3 69 60.9
HanXRQChr09g0247961 Helianthus annuus HOM05D004515 ORTHO05D006013 4.2e-14 81.3 71 59.2
Manes.07G128900 Manihot esculenta HOM05D004515 ORTHO05D006013 4.2e-14 81.3 69 58.0
Potri.008G067900 Populus trichocarpa HOM05D004515 ORTHO05D006013 4.2e-14 81.3 69 59.4
MELO3C008295.2 Cucumis melo HOM05D004515 ORTHO05D006013 5.5e-14 80.9 69 58.0
Hma1.2p1_0703F.1_g206460 Hydrangea macrophylla HOM05D004515 ORTHO05D006013 5.5e-14 80.9 69 60.9
Psat5g126840 Pisum sativum HOM05D004515 ORTHO05D006013 5.5e-14 80.9 72 58.3
Sabra08G0049800 Salix brachista HOM05D004515 ORTHO05D006013 5.5e-14 80.9 69 58.0
Sp4g22390 Schrenkiella parvula HOM05D004515 ORTHO05D006013 5.5e-14 80.9 69 59.4
Actinidia33927 Actinidia chinensis HOM05D004515 ORTHO05D006013 7.2e-14 80.5 69 59.4
BcaC01g05435 Brassica carinata HOM05D004515 ORTHO05D006013 7.2e-14 80.5 69 58.0
Medtr3g070410 Medicago truncatula HOM05D004515 ORTHO05D006013 7.2e-14 80.5 48 75.0
Rhsim03G0143400 Rhododendron simsii HOM05D004515 ORTHO05D006013 7.2e-14 80.5 69 56.5
Lalb_Chr08g0231721 Lupinus albus HOM05D004515 ORTHO05D006013 9.4e-14 80.1 70 60.0
Nn2g11487 Nelumbo nucifera HOM05D004515 ORTHO05D006013 9.4e-14 80.1 69 58.0
ATR0618G041 Amborella trichopoda HOM05D004515 ORTHO05D006013 1.6e-13 79.3 69 56.5
HanXRQChr14g0459811 Helianthus annuus HOM05D004515 ORTHO05D006013 1.6e-13 79.3 71 57.7
A03p22540 Brassica napus HOM05D004515 ORTHO05D006013 2.1e-13 79.0 67 59.7
C03p26690 Brassica napus HOM05D004515 ORTHO05D006013 2.1e-13 79.0 67 59.7
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 2.1e-13 79.0 67 59.7
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 2.1e-13 79.0 67 59.7
Thhalv10016489m.g Eutrema salsugineum HOM05D004515 ORTHO05D006013 2.1e-13 79.0 69 58.0
HanXRQChr08g0222111 Helianthus annuus HOM05D004515 ORTHO05D006013 2.1e-13 79.0 69 56.5
Lsat_1_v5_gn_8_12281 Lactuca sativa HOM05D004515 ORTHO05D006013 2.1e-13 79.0 69 55.1
Hund13856 Selenicereus undatus HOM05D004515 ORTHO05D006013 2.1e-13 79.0 71 57.7
Carub.0004s2225 Capsella rubella HOM05D004515 ORTHO05D006013 2.7e-13 78.6 69 58.0
CARHR135050 Cardamine hirsuta HOM05D004515 ORTHO05D006013 2.7e-13 78.6 69 58.0
Migut.F01384 Erythranthe guttata HOM05D004515 ORTHO05D006013 2.7e-13 78.6 69 49.3
PSO339G0388 Papaver somniferum HOM05D004515 ORTHO05D006013 2.7e-13 78.6 69 53.6
PSO801G0853 Papaver somniferum HOM05D004515 ORTHO05D006013 2.7e-13 78.6 69 53.6
PGR044G1178 Punica granatum HOM05D004515 ORTHO05D006013 2.7e-13 78.6 46 76.1
SGA_v2.0_scaffold44G16693 Striga asiatica HOM05D004515 ORTHO05D006013 2.7e-13 78.6 69 53.6
A05p06380 Brassica napus HOM05D004515 ORTHO05D006013 3.6e-13 78.2 67 58.2
BraA03t11480Z Brassica rapa HOM05D004515 ORTHO05D006013 3.6e-13 78.2 67 59.7
BraA05t19606Z Brassica rapa HOM05D004515 ORTHO05D006013 3.6e-13 78.2 67 58.2
BcaB02g09054 Brassica carinata HOM05D004515 ORTHO05D006013 4.6e-13 77.8 67 58.2
Lsat_1_v5_gn_5_153581 Lactuca sativa HOM05D004515 ORTHO05D006013 4.6e-13 77.8 46 69.6
SalBow6G5289 Salvia bowleyana HOM05D004515 ORTHO05D006013 4.6e-13 77.8 69 53.6
AUR62022874 Chenopodium quinoa HOM05D004515 ORTHO05D006013 7.9e-13 77.0 46 71.7
ECA233G1018 Erigeron canadensis HOM05D000093 ORTHO05D006013 7.9e-13 77.0 69 53.6
SEGI_16828 Sequoiadendron giganteum HOM05D004515 ORTHO05D006013 7.9e-13 77.0 73 52.1
CDE04G3525 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 1.0e-12 76.6 71 50.7
unitig_747.g21413 Utricularia gibba HOM05D004515 ORTHO05D006013 1.0e-12 76.6 69 53.6
HPP92_012630 Vanilla planifolia HOM05D004515 ORTHO05D006013 1.0e-12 76.6 69 52.2
HPP92_028025 Vanilla planifolia HOM05D004515 ORTHO05D006013 1.0e-12 76.6 69 52.2
Aa31LG5G19520 Aethionema arabicum HOM05D004515 ORTHO05D006013 1.8e-12 75.9 69 53.6
CDE02G2203 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 2.3e-12 75.5 69 52.2
THA.LOC104810499 Tarenaya hassleriana HOM05D004515 ORTHO05D006013 3.0e-12 75.1 69 52.2
ECA238G3319 Erigeron canadensis HOM05D004515 ORTHO05D006013 3.9e-12 74.7 71 52.1
DCAR_024830 Daucus carota HOM05D004515 ORTHO05D006013 5.1e-12 74.3 71 53.5
Os03g0698350 Oryza sativa ssp. japonica HOM05D004515 ORTHO05D006013 5.1e-12 74.3 69 49.3
AUR62012243 Chenopodium quinoa HOM05D004515 ORTHO05D006013 3.3e-11 71.6 46 67.4
Pp3c22_5080 Physcomitrium patens HOM05D004515 ORTHO05D006013 5.7e-11 70.9 61 50.8
CBR_g58691 Chara braunii HOM05D004515 ORTHO05D006013 4.8e-10 67.8 50 56.0
SMO266G0006 Selaginella moellendorffii HOM05D004515 ORTHO05D006013 8.2e-10 67.0 44 63.6
AagrBONN_evm.TU.Sc2ySwM_228.5536 Anthoceros agrestis HOM05D004515 ORTHO05D006013 1.1e-09 66.6 71 46.5
Cre10.g428150 Chlamydomonas reinhardtii HOM05D004515 ORTHO05D006013 7.7e-08 60.5 41 61.0
ECA246G5015 Erigeron canadensis HOM05D000290 ORTHO05D006676 1.1e-06 56.6 42 57.1
Lsat_1_v5_gn_8_112060 Lactuca sativa HOM05D000290 ORTHO05D006676 4.2e-06 54.7 42 57.1
Aqoxy3G04138_Aqoxy3G04139 Aquilegia oxysepala HOM05D000290 ORTHO05D006676 7.2e-06 53.9 73 38.4
LjContig00141g0021713 Lotus japonicus HOM05D000290 ORTHO05D006676 7.2e-06 53.9 67 37.3
Eucgr.J01643 Eucalyptus grandis HOM05D000290 ORTHO05D006676 9.4e-06 53.5 42 54.8


User provided reference genes

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