Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 7.5e-169 597.0 288 100.0
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 6.1e-155 550.8 278 95.3
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 4.0e-154 548.1 278 94.6
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 1.7e-149 532.7 277 89.5
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 6.6e-149 530.8 282 88.3
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 1.9e-148 529.3 275 90.9
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 7.3e-148 527.3 286 87.1
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 1.4e-146 523.1 281 87.5
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 2.9e-144 515.4 282 85.5
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 3.7e-144 515.0 278 88.1
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 1.8e-143 512.7 283 86.2
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 4.1e-143 511.5 274 88.0
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 5.4e-143 511.1 280 86.4
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 7.0e-143 510.8 280 86.8
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 1.2e-142 510.0 284 84.2
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 1.2e-142 510.0 319 78.1
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 1.6e-142 509.6 284 83.8
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 4.6e-142 508.1 283 85.2
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 1.0e-141 506.9 284 83.8
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.3e-141 506.5 275 86.5
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 1.3e-141 506.5 283 85.9
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 2.3e-141 505.8 288 83.0
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 2.3e-141 505.8 284 82.7
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 5.0e-141 504.6 279 85.7
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 8.6e-141 503.8 283 85.2
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 1.1e-140 503.4 288 84.0
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 4.3e-140 501.5 279 85.3
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 9.5e-140 500.4 277 84.8
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 9.5e-140 500.4 275 85.1
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 1.6e-139 499.6 276 86.2
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 2.1e-139 499.2 278 86.0
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 3.6e-139 498.4 282 84.8
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 3.6e-139 498.4 282 84.8
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.4e-138 496.5 282 84.4
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 1.8e-138 496.1 282 81.9
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 4.0e-138 495.0 274 85.0
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 5.2e-138 494.6 280 83.6
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 8.9e-138 493.8 265 88.7
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 3.4e-137 491.9 257 89.5
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 4.4e-137 491.5 283 81.3
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 5.8e-137 491.1 284 81.3
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.7e-136 489.6 306 77.1
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 2.2e-136 489.2 285 82.8
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 2.9e-136 488.8 277 83.8
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 2.9e-136 488.8 280 85.4
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 6.4e-136 487.6 274 83.6
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 1.1e-135 486.9 277 83.0
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 1.4e-135 486.5 272 84.6
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 1.4e-135 486.5 270 87.4
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 1.9e-135 486.1 302 79.1
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 4.1e-135 485.0 274 83.2
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 5.4e-135 484.6 272 84.2
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 9.2e-135 483.8 274 81.8
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 9.2e-135 483.8 281 81.5
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.6e-134 483.0 272 84.2
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 2.0e-134 482.6 277 82.3
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 2.7e-134 482.3 274 82.8
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 3.5e-134 481.9 272 83.8
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 4.6e-134 481.5 276 81.5
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 1.3e-133 479.9 280 80.7
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 3.9e-133 478.4 286 80.4
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 6.6e-133 477.6 274 81.8
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 6.6e-133 477.6 271 83.4
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 1.9e-132 476.1 278 80.9
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.9e-132 476.1 274 81.0
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.9e-132 476.1 274 81.0
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 2.5e-132 475.7 279 80.3
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 3.3e-132 475.3 277 81.6
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 3.3e-132 475.3 271 81.9
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 3.3e-132 475.3 271 81.2
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 4.3e-132 474.9 284 80.6
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 7.3e-132 474.2 279 80.6
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 7.3e-132 474.2 271 81.9
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 9.5e-132 473.8 277 79.8
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 1.2e-131 473.4 274 78.8
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 3.6e-131 471.9 277 80.9
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 4.7e-131 471.5 279 81.4
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 1.1e-130 470.3 273 79.9
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 2.3e-130 469.2 285 79.6
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 2.3e-130 469.2 316 72.8
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 3.1e-130 468.8 274 81.4
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 4.0e-130 468.4 284 79.6
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 5.2e-130 468.0 281 81.5
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 8.9e-130 467.2 290 77.9
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 2.0e-129 466.1 271 81.2
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 3.7e-128 461.8 275 80.7
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 5.4e-127 458.0 318 72.6
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 1.7e-125 453.0 297 74.4
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 5.1e-125 451.4 271 79.3
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 6.6e-125 451.1 271 78.2
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 8.6e-125 450.7 279 79.6
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 1.1e-124 450.3 277 76.2
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 9.5e-124 447.2 282 76.6
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 1.2e-123 446.8 273 78.4
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 2.8e-123 445.7 360 64.2
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 8.9e-122 440.7 271 77.5
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 1.5e-121 439.9 271 77.5
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 4.4e-121 438.3 271 77.1
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 5.8e-121 438.0 275 74.9
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 3.7e-120 435.3 312 71.2
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 3.7e-120 435.3 272 77.2
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.1e-119 433.7 270 75.9
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 1.7e-117 426.4 268 75.0
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 8.6e-117 424.1 237 84.4
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 1.4e-114 416.8 275 73.5
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 2.2e-112 409.5 271 71.2
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 1.1e-108 397.1 221 85.5
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 5.6e-108 394.8 241 76.3
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 6.2e-107 391.3 221 83.7
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 2.2e-104 382.9 275 68.4
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 8.4e-104 380.9 198 90.4
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.4e-103 380.2 197 89.8
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.5e-100 370.2 292 65.8
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.4e-98 363.6 276 61.2
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 2.0e-97 359.8 210 81.0
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 3.8e-96 355.5 274 62.0
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 3.9e-93 345.5 272 61.4
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 5.6e-92 341.7 221 76.5
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 2.9e-88 329.3 189 82.5
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 2.9e-88 329.3 189 82.5
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 5.9e-81 305.1 229 66.4
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 5.5e-79 298.5 226 64.2
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 2.2e-75 286.6 271 53.9
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 3.2e-71 272.7 302 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.4e-66 257.3 183 65.6
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 5.3e-66 255.4 154 77.3
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 2.6e-65 253.1 165 76.4
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 2.6e-60 236.5 210 52.9
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 2.1e-54 216.9 266 45.9
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 2.7e-54 216.5 131 77.1
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 6.5e-48 195.3 237 47.3
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 3.8e-40 169.5 211 42.7
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 3.6e-38 162.9 96 76.0
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 8.0e-38 161.8 292 36.0
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 1.6e-30 137.5 113 61.9
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 1.0e-29 134.8 85 71.8
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 4.1e-18 96.3 89 56.2
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 5.2e-13 79.3 45 77.8
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 6.8e-13 79.0 39 87.2


User provided reference genes

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