Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.2e-80 302.4 169 100.0
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 4.4e-60 235.0 169 80.5
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.8e-58 229.6 168 78.0
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 8.0e-54 214.2 170 74.7
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.0e-53 213.8 169 74.6
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.2e-52 210.3 168 73.8
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.2e-52 210.3 168 69.0
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 1.5e-52 209.9 172 77.9
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 4.4e-52 208.4 168 72.0
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.7e-51 206.5 169 72.8
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 4.8e-51 204.9 168 75.6
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.1e-50 203.8 166 70.5
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 3.1e-50 202.2 168 74.4
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.1e-50 200.7 166 70.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.0e-49 199.5 170 70.6
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 4.5e-49 198.4 165 71.5
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 7.7e-49 197.6 170 71.8
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 2.9e-48 195.7 165 70.9
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.8e-48 195.3 167 69.5
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 5.0e-48 194.9 168 67.9
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.9e-47 193.0 170 68.2
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 2.5e-47 192.6 170 70.6
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 5.5e-47 191.4 164 68.9
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 7.2e-47 191.0 168 63.7
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 9.4e-47 190.7 167 67.7
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.7e-46 189.1 168 63.7
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.7e-46 189.1 157 75.2
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.7e-46 189.1 165 69.7
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.0e-45 187.2 165 69.1
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.0e-45 187.2 170 68.8
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.8e-45 186.4 162 68.5
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 2.3e-45 186.0 170 68.2
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.0e-45 185.7 157 73.9
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 4.0e-45 185.3 169 66.3
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.2e-45 184.9 157 73.2
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 8.8e-45 184.1 169 66.9
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 2.0e-44 183.0 157 68.8
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 2.6e-44 182.6 169 65.7
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.6e-44 182.6 157 73.9
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 4.4e-44 181.8 169 65.7
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 5.7e-44 181.4 169 67.5
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.2e-43 179.5 169 63.3
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 4.8e-43 178.3 157 67.5
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 1.8e-42 176.4 170 61.8
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 1.8e-42 176.4 170 61.8
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 2.4e-42 176.0 157 66.9
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 4.1e-42 175.3 158 69.0
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 9.1e-42 174.1 169 63.3
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 2.7e-41 172.6 173 61.8
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 3.5e-41 172.2 146 70.5
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.5e-41 171.8 169 64.5
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.0e-40 170.6 157 65.0
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 1.3e-40 170.2 166 60.8
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 1.7e-40 169.9 170 61.8
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 5.0e-40 168.3 169 63.3
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 6.6e-40 167.9 157 63.7
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.5e-39 166.0 159 64.2
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 5.5e-39 164.9 185 58.4
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.6e-38 163.3 167 63.5
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 2.8e-38 162.5 151 64.2
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.8e-38 162.5 153 64.1
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 4.7e-38 161.8 186 57.0
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 8.0e-38 161.0 172 60.5
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.0e-37 160.6 123 75.6
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 4.0e-37 158.7 173 57.8
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 6.8e-37 157.9 157 60.5
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.4e-36 155.2 165 58.8
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 4.4e-36 155.2 138 66.7
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 7.5e-36 154.5 148 64.2
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.7e-35 153.3 157 61.8
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 3.7e-35 152.1 157 61.8
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 3.7e-35 152.1 157 61.8
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 3.7e-35 152.1 157 61.8
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 3.7e-35 152.1 157 61.8
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 4.9e-35 151.8 165 58.2
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 6.3e-35 151.4 126 72.2
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 6.3e-35 151.4 168 59.5
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 6.3e-35 151.4 160 57.5
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 1.8e-34 149.8 169 58.0
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 3.1e-34 149.1 167 58.1
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 4.1e-34 148.7 164 57.3
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 7.0e-34 147.9 159 59.7
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 7.0e-34 147.9 175 55.4
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 4.5e-33 145.2 148 60.1
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 4.5e-33 145.2 128 68.0
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 7.8e-33 144.4 142 64.1
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 7.8e-33 144.4 142 64.1
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 1.0e-32 144.1 155 56.8
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.3e-32 142.9 161 56.5
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.9e-32 142.5 165 55.8
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 6.6e-32 141.4 170 56.5
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 1.5e-31 140.2 159 54.7
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.5e-31 140.2 175 50.3
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.9e-31 139.8 160 58.8
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.3e-31 138.7 162 55.6
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.3e-31 138.7 151 61.6
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 2.8e-30 136.0 160 55.6
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 3.6e-30 135.6 160 56.9
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.4e-29 133.7 153 54.2
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.1e-29 132.5 157 55.4
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.6e-28 129.4 231 46.3
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 4.4e-28 128.6 182 48.9
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.7e-27 126.7 182 47.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.7e-27 126.7 157 50.3
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 3.7e-27 125.6 154 56.5
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 4.9e-27 125.2 204 44.6
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.1e-26 124.0 191 49.2
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.9e-26 123.2 112 66.1
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 5.4e-26 121.7 134 57.5
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 2.7e-25 119.4 172 49.4
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.0e-24 117.5 114 61.4
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 5.0e-24 115.2 151 53.0
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 8.6e-24 114.4 145 56.6
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.5e-23 113.6 98 66.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 2.5e-23 112.8 148 48.0
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 3.3e-23 112.5 131 55.7
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 4.3e-23 112.1 161 50.3
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 4.3e-23 112.1 171 52.0
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 9.5e-23 110.9 164 48.2
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 3.4e-20 102.4 92 71.7
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 5.8e-20 101.7 122 56.6
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 7.5e-20 101.3 155 46.5
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.2e-19 99.8 161 46.6
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 6.4e-19 98.2 141 49.6
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 1.9e-18 96.7 84 72.6
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 3.2e-18 95.9 141 48.9
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 3.2e-18 95.9 169 45.0
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.1e-17 93.2 95 55.8
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.7e-16 90.1 90 58.9
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 2.3e-16 89.7 153 46.4
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 9.5e-15 84.3 81 58.0
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 1.1e-13 80.9 118 47.5
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.4e-13 80.5 86 65.1
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.8e-13 80.1 75 58.7
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 6.8e-13 78.2 86 57.0
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.9e-13 77.8 104 51.9
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 8.9e-13 77.8 104 51.9
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-12 76.3 104 51.0
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-11 73.9 56 71.4
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.9e-10 70.1 56 64.3
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 4.1e-10 68.9 60 73.3
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.6e-09 67.0 169 37.3
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-07 60.8 62 61.3
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.9e-07 60.1 60 61.7
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 7.3e-07 58.2 96 50.0
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 9.5e-07 57.8 55 56.4


User provided reference genes

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