Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 3.6e-236 821.2 422 100.0
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 5.0e-214 747.7 425 89.4
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.7e-190 669.5 426 79.6
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 4.7e-188 661.4 419 77.3
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 3.4e-186 655.2 419 79.0
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 7.5e-186 654.1 419 78.5
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-185 653.3 419 79.2
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 9.2e-184 647.1 427 74.0
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 6.6e-182 641.0 424 78.3
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.1e-181 640.2 424 75.0
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.9e-181 639.4 423 74.5
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 7.3e-181 637.5 434 71.9
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.2e-180 636.7 423 74.0
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 2.1e-180 636.0 421 74.1
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 4.7e-180 634.8 423 73.3
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.4e-179 633.3 425 75.3
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 2.3e-179 632.5 426 79.3
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.3e-179 632.5 423 73.5
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 4.0e-179 631.7 434 71.4
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 8.9e-179 630.6 421 73.9
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.9e-179 630.6 459 70.4
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.2e-178 630.2 424 73.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.2e-178 630.2 430 71.6
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 3.4e-178 628.6 422 78.4
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.3e-177 626.7 434 71.0
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 3.7e-177 625.2 425 74.6
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 4.9e-177 624.8 426 75.1
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.4e-176 622.5 423 72.3
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 3.9e-174 615.1 423 72.1
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 4.7e-172 608.2 423 71.2
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.1e-171 607.1 421 75.5
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 3.1e-171 605.5 422 69.0
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 4.0e-171 605.1 429 69.9
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 6.8e-171 604.4 423 70.9
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.2e-170 603.6 421 69.6
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.2e-170 603.6 421 75.3
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.0e-170 602.8 424 72.9
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 2.6e-170 602.4 427 67.9
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 2.6e-170 602.4 428 69.9
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.3e-169 600.1 423 70.2
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 2.9e-169 599.0 435 68.3
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.1e-168 597.0 386 76.7
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 2.4e-168 595.9 423 70.4
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 7.1e-168 594.3 419 68.0
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 2.1e-167 592.8 426 71.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 4.6e-167 591.7 422 67.8
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 4.6e-167 591.7 488 68.0
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 4.6e-167 591.7 417 70.0
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.3e-166 590.1 419 66.8
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 2.3e-166 589.3 419 68.0
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 2.3e-166 589.3 430 69.5
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 3.0e-166 589.0 421 67.0
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 3.9e-166 588.6 423 67.4
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 3.9e-166 588.6 419 67.3
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 3.9e-166 588.6 433 67.0
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 5.1e-166 588.2 422 67.3
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 5.1e-166 588.2 422 67.3
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 5.1e-166 588.2 424 69.8
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 5.1e-166 588.2 430 71.9
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.1e-165 587.0 423 68.1
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 3.3e-165 585.5 419 66.6
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 4.3e-165 585.1 424 69.3
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 5.6e-165 584.7 434 71.2
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 9.6e-165 583.9 425 69.2
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.6e-164 583.2 450 69.8
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.6e-164 583.2 429 68.3
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 6.2e-164 581.3 429 68.1
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.4e-163 580.1 422 68.2
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 5.2e-163 578.2 423 69.0
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 9.0e-163 577.4 430 65.6
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.2e-162 577.0 443 69.8
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.5e-162 576.6 406 67.2
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 4.4e-162 575.1 418 70.8
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 4.4e-162 575.1 418 69.6
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 5.8e-162 574.7 384 75.8
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.7e-161 573.2 424 70.8
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.2e-161 572.8 457 65.6
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 2.9e-161 572.4 427 72.8
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 4.2e-160 568.5 421 67.9
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.6e-159 565.1 393 73.0
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 6.0e-159 564.7 390 71.8
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 5.1e-158 561.6 330 79.1
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 7.3e-157 557.8 431 63.3
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 9.9e-154 547.4 433 67.7
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.1e-152 543.9 423 65.2
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.4e-152 543.5 421 63.7
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 7.1e-152 541.2 476 60.5
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.1e-151 539.7 415 63.6
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 8.1e-148 527.7 431 61.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 5.3e-147 525.0 450 62.9
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 7.6e-146 521.2 390 66.7
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 4.9e-145 518.5 413 63.7
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-144 516.9 322 76.1
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.8e-142 510.0 319 76.2
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.0e-142 509.2 331 74.6
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 8.4e-137 491.1 301 75.7
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 2.5e-136 489.6 299 76.3
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 7.9e-135 484.6 300 75.3
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.0e-134 484.2 420 64.3
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 3.9e-134 482.3 421 60.1
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.5e-133 480.3 336 67.6
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.7e-129 466.8 310 73.2
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 6.5e-129 464.9 349 64.5
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.3e-124 450.7 433 51.7
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 4.2e-120 435.6 429 51.3
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-118 430.6 316 67.1
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 8.8e-118 427.9 433 57.5
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.3e-116 424.1 410 51.7
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 2.2e-113 413.3 421 52.5
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.1e-111 406.8 298 66.8
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 5.9e-98 362.1 316 55.4
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.8e-97 359.4 278 66.2
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.3e-81 307.8 281 64.8
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.0e-78 296.6 183 70.5
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.1e-72 278.1 356 41.9
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 1.7e-68 264.2 228 53.9
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 1.1e-62 245.0 374 39.6
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 4.9e-60 236.1 321 42.7
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 3.2e-59 233.4 249 52.6
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 4.6e-58 229.6 576 30.0
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.3e-48 196.8 129 76.7
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 2.0e-45 187.6 195 50.3
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.4e-43 181.4 113 75.2
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.7e-42 177.2 121 76.9
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 3.3e-40 170.2 117 71.8
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 9.6e-32 142.1 256 39.5
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.7e-23 113.6 121 52.9
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 4.5e-21 106.7 107 48.6
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.3e-20 105.1 143 44.1
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.2e-12 77.8 60 63.3
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 7.4e-08 62.8 39 69.2
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 7.4e-08 62.8 62 53.2


User provided reference genes

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