Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 1.1e-147 526.6 262 100.0
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 2.0e-112 409.5 308 70.5
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 4.2e-110 401.7 303 71.0
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 5.6e-107 391.3 264 77.7
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.1e-97 359.0 267 71.9
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 1.5e-96 356.7 229 78.6
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.6e-96 355.9 230 78.7
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 1.4e-92 343.6 262 67.2
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 1.4e-92 343.6 222 75.2
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.5e-91 340.1 245 71.4
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 5.3e-89 331.6 218 75.2
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 5.9e-88 328.2 258 67.8
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 1.9e-86 323.2 228 70.2
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 4.2e-86 322.0 273 65.9
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 2.1e-85 319.7 223 71.3
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 2.1e-85 319.7 223 71.3
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 2.1e-85 319.7 235 69.4
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 2.1e-85 319.7 229 70.3
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 2.7e-85 319.3 267 66.3
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 7.9e-85 317.8 229 69.4
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 3.9e-84 315.5 274 63.9
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 3.3e-83 312.4 263 65.8
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 9.7e-83 310.8 266 65.0
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 2.0e-80 303.1 263 62.7
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 4.5e-80 302.0 262 59.2
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 1.3e-79 300.4 258 61.2
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 6.5e-79 298.1 257 60.7
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.9e-78 296.6 254 63.0
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.5e-78 296.2 258 59.7
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.5e-78 296.2 258 59.7
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 3.2e-78 295.8 263 61.6
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 4.2e-78 295.4 265 61.1
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.1e-77 293.1 254 59.8
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 5.2e-76 288.5 184 75.0
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 6.7e-76 288.1 248 60.1
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 7.4e-75 284.6 216 70.4
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 9.7e-75 284.3 216 69.9
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 4.8e-74 282.0 185 73.5
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 8.2e-74 281.2 235 63.4
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 1.4e-73 280.4 185 72.4
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 1.6e-72 276.9 259 61.0
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 1.1e-70 270.8 158 81.6
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 4.2e-70 268.9 244 59.0
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 5.5e-70 268.5 235 60.9
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 2.7e-69 266.2 269 55.0
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 6.3e-66 255.0 209 61.2
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 2.4e-65 253.1 266 51.5
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 7.0e-65 251.5 260 54.6
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 5.9e-64 248.4 240 53.3
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 7.7e-64 248.1 221 57.5
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 1.0e-63 247.7 269 51.3
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 1.0e-63 247.7 257 52.9
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 1.7e-63 246.9 247 53.0
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 5.0e-63 245.4 247 52.6
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.1e-62 244.2 246 56.1
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.5e-62 243.8 267 51.3
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.5e-62 243.8 267 51.3
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.5e-62 243.8 267 51.3
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 2.5e-62 243.0 264 53.8
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 1.0e-60 237.7 266 50.0
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.8e-60 236.9 230 53.9
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 3.0e-60 236.1 262 50.4
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 3.0e-60 236.1 262 50.4
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 4.0e-60 235.7 255 51.4
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 6.8e-60 235.0 255 51.0
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.5e-59 233.8 228 54.4
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 2.0e-59 233.4 258 50.8
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 4.4e-59 232.3 219 55.3
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 9.8e-59 231.1 252 50.4
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.4e-57 227.3 212 54.7
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 2.4e-57 226.5 235 51.1
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 9.1e-57 224.6 212 54.2
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.5e-56 222.6 151 68.2
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 5.9e-56 221.9 261 47.1
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 1.7e-55 220.3 174 63.2
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 2.9e-55 219.5 229 54.1
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.9e-54 216.9 127 80.3
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.5e-51 207.2 210 51.9
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 2.0e-51 206.8 225 48.9
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 2.4e-49 199.9 180 54.4
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 4.1e-49 199.1 160 62.5
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 4.1e-49 199.1 227 49.3
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 1.2e-48 197.6 227 45.8
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 1.2e-48 197.6 340 37.9
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 4.5e-48 195.7 258 46.9
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 2.5e-46 189.9 164 60.4
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 1.0e-44 184.5 266 42.9
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 6.8e-44 181.8 144 60.4
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 2.0e-43 180.3 157 61.1
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 7.5e-43 178.3 256 41.4
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 1.4e-41 174.1 156 60.9
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 1.9e-41 173.7 259 41.3
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 6.0e-40 168.7 146 61.0
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 2.3e-39 166.8 150 62.0
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 3.0e-39 166.4 146 60.3
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 3.9e-39 166.0 152 61.8
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 6.6e-39 165.2 150 61.3
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 6.6e-39 165.2 150 60.7
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.1e-38 164.5 232 41.4
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 1.5e-38 164.1 152 61.2
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.9e-38 163.7 242 40.9
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 2.5e-38 163.3 146 59.6
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 4.3e-38 162.5 230 37.4
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 9.5e-38 161.4 138 62.3
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 1.2e-37 161.0 146 58.2
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 4.7e-37 159.1 146 56.2
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 1.8e-36 157.1 147 58.5
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.1e-36 156.4 316 33.2
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 1.2e-35 154.5 146 55.5
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 7.8e-32 141.7 152 52.6
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 7.8e-32 141.7 237 37.6
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 1.9e-30 137.1 149 49.7
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 1.2e-27 127.9 268 32.1
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 2.0e-27 127.1 206 39.3
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 1.4e-25 120.9 154 48.1
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 1.0e-23 114.8 78 59.0
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.6e-21 107.5 66 72.7
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 3.1e-12 76.6 79 40.5
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 3.8e-10 69.7 110 34.5
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 1.9e-09 67.4 69 47.8
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 8.7e-07 58.5 66 33.3


User provided reference genes

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