Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G150900 Prunus persica HOM05D006563 ORTHO05D008154 5.0e-128 461.1 226 100.0
MD14G1156900 Malus domestica HOM05D006563 ORTHO05D008154 4.9e-115 417.9 226 90.7
FAN04G0682 Fragaria x ananassa HOM05D006563 ORTHO05D008154 4.1e-114 414.8 226 88.5
FAN18G2834 Fragaria x ananassa HOM05D006563 ORTHO05D008154 2.0e-113 412.5 226 87.6
FvH4_5g08340 Fragaria vesca HOM05D006563 ORTHO05D008154 1.0e-112 410.2 226 87.2
FAN04G3009 Fragaria x ananassa HOM05D006563 ORTHO05D008154 1.0e-112 410.2 226 87.6
FAN13G1867 Fragaria x ananassa HOM05D006563 ORTHO05D008154 1.0e-112 410.2 226 87.6
RcHm_v2.0_Chr7g0190121 Rosa chinensis HOM05D006563 ORTHO05D008154 1.9e-111 406.0 226 87.2
Dinv23146 Davidia involucrata HOM05D006563 ORTHO05D008154 1.4e-109 399.8 224 87.1
CANSAT80G0303 Cannabis sativa HOM05D006563 ORTHO05D008154 2.0e-108 396.0 228 84.6
Atru.chr6.1794 Acer truncatum HOM05D006563 ORTHO05D008154 1.4e-106 389.8 226 83.6
Potri.015G096400 Populus trichocarpa HOM05D006563 ORTHO05D008154 3.5e-105 385.2 230 83.9
Ciclev10032657m.g Citrus clementina HOM05D006563 ORTHO05D008154 6.0e-105 384.4 228 85.1
GSVIVG01008544001 Vitis vinifera HOM05D006563 ORTHO05D008154 6.0e-105 384.4 228 83.3
TWI39G0919 Tripterygium wilfordii HOM05D006563 ORTHO05D008154 1.0e-104 383.6 224 86.2
ClCG03G003770 Citrullus lanatus HOM05D006563 ORTHO05D008154 5.0e-104 381.3 225 82.2
TAR374G0821 Trochodendron aralioides HOM05D006563 ORTHO05D008154 5.0e-104 381.3 224 82.6
Thecc.03G129300 Theobroma cacao HOM05D006563 ORTHO05D008154 1.5e-103 379.8 226 82.3
Duzib205G1898 Durio zibethinus HOM05D006563 ORTHO05D008154 2.5e-103 379.0 226 80.1
MELO3C002362.2 Cucumis melo HOM05D006563 ORTHO05D008154 7.3e-103 377.5 225 80.9
Cpa.g.sc13.115 Carica papaya HOM05D006563 ORTHO05D008154 9.5e-103 377.1 227 81.5
Hma1.2p1_0426F.1_g150610 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 9.5e-103 377.1 226 81.9
FAN08G2924 Fragaria x ananassa HOM05D006563 ORTHO05D008154 1.6e-102 376.3 247 76.5
COL.COLO4_28130 Corchorus olitorius HOM05D006563 ORTHO05D008154 2.1e-102 375.9 226 81.4
Carub.0005s1473 Capsella rubella HOM05D006563 ORTHO05D008154 3.6e-102 375.2 224 81.2
Gorai.008G206400 Gossypium raimondii HOM05D006563 ORTHO05D008154 3.6e-102 375.2 224 80.8
Sc04g0000640 Simmondsia chinensis HOM05D006563 ORTHO05D008154 3.6e-102 375.2 226 81.0
Manes.06G119700 Manihot esculenta HOM05D006563 ORTHO05D008154 6.2e-102 374.4 226 81.4
AL5G27990 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 1.1e-101 373.6 225 80.4
Gohir.D12G192100 Gossypium hirsutum HOM05D006563 ORTHO05D008154 1.1e-101 373.6 224 80.4
Gohir.A12G189700 Gossypium hirsutum HOM05D006563 ORTHO05D008154 2.3e-101 372.5 224 79.9
Lj4g0002806 Lotus japonicus HOM05D006563 ORTHO05D008154 4.0e-101 371.7 224 79.9
CsaV3_1G009660 Cucumis sativus L. HOM05D006563 ORTHO05D008154 6.8e-101 370.9 225 79.6
AT3G48540 Arabidopsis thaliana HOM05D006563 ORTHO05D008154 8.9e-101 370.5 225 80.0
Thhalv10010696m.g Eutrema salsugineum HOM05D006563 ORTHO05D008154 5.8e-100 367.9 225 78.7
Sp5g13440 Schrenkiella parvula HOM05D006563 ORTHO05D008154 2.2e-99 365.9 223 78.5
QL10p002894 Quercus lobata HOM05D006563 ORTHO05D008154 6.4e-99 364.4 251 74.9
Ca_26101_v3 Cicer arietinum L. HOM05D006563 ORTHO05D008154 1.1e-98 363.6 224 80.4
Nitab4.5_0003282g0060 Nicotiana tabacum HOM05D006563 ORTHO05D008154 1.9e-98 362.8 224 80.8
BcaB05g23009 Brassica carinata HOM05D006563 ORTHO05D008154 4.1e-98 361.7 223 78.0
Phvul.003G211300 Phaseolus vulgaris HOM05D006563 ORTHO05D008154 4.1e-98 361.7 224 80.4
Solyc03g111350.3 Solanum lycopersicum HOM05D006563 ORTHO05D008154 7.1e-98 360.9 226 81.0
CARHR157340 Cardamine hirsuta HOM05D006563 ORTHO05D008154 9.2e-98 360.5 224 76.8
A01p25680 Brassica napus HOM05D006563 ORTHO05D008154 1.2e-97 360.1 223 77.6
BraA01t02447Z Brassica rapa HOM05D006563 ORTHO05D008154 1.2e-97 360.1 223 77.6
Nitab4.5_0004750g0020 Nicotiana tabacum HOM05D006563 ORTHO05D008154 1.2e-97 360.1 227 79.3
Peaxi162Scf00089g00627 Petunia axillaris HOM05D006563 ORTHO05D008154 1.2e-97 360.1 225 77.8
BcaC09g49875 Brassica carinata HOM05D006563 ORTHO05D008154 1.6e-97 359.8 223 77.1
C01p32250 Brassica napus HOM05D006563 ORTHO05D008154 1.6e-97 359.8 223 77.1
Aa31LG4G17160 Aethionema arabicum HOM05D006563 ORTHO05D008154 3.5e-97 358.6 228 76.3
Sed0017169 Sechium edule HOM05D006563 ORTHO05D008154 6.0e-97 357.8 226 78.3
Sopen03g030480 Solanum pennellii HOM05D006563 ORTHO05D008154 6.0e-97 357.8 226 80.1
BolC1t03129H Brassica oleracea HOM05D006563 ORTHO05D008154 1.3e-96 356.7 223 76.7
SalBow6G4201 Salvia bowleyana HOM05D006563 ORTHO05D008154 1.3e-96 356.7 224 76.3
SalBow6G4357 Salvia bowleyana HOM05D006563 ORTHO05D008154 1.3e-96 356.7 224 76.3
Actinidia08872 Actinidia chinensis HOM05D006563 ORTHO05D008154 1.7e-96 356.3 224 77.2
PGSC0003DMG400015182 Solanum tuberosum HOM05D006563 ORTHO05D008154 1.7e-96 356.3 226 79.6
Medtr4g103300 Medicago truncatula HOM05D006563 ORTHO05D008154 2.3e-96 355.9 232 76.7
Nn4g22315 Nelumbo nucifera HOM05D006563 ORTHO05D008154 3.9e-96 355.1 210 82.4
Sabra15G0117200 Salix brachista HOM05D006563 ORTHO05D008154 5.1e-96 354.8 210 83.8
CAN.G352.13 Capsicum annuum HOM05D006563 ORTHO05D008154 8.6e-96 354.0 227 78.0
CSS0042372 Camellia sinensis var. sinensis HOM05D006563 ORTHO05D008154 1.5e-95 353.2 226 76.1
Eucgr.B00111 Eucalyptus grandis HOM05D006563 ORTHO05D008154 4.3e-95 351.7 236 74.2
Oeu036009.4 Olea europaea HOM05D006563 ORTHO05D008154 4.3e-95 351.7 226 77.4
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 4.3e-95 351.7 223 78.5
HanXRQChr13g0408701 Helianthus annuus HOM05D006563 ORTHO05D008154 5.6e-95 351.3 225 76.9
Hund02442 Selenicereus undatus HOM05D006563 ORTHO05D008154 9.5e-95 350.5 224 75.4
Aqoxy5G03376 Aquilegia oxysepala HOM05D006563 ORTHO05D008154 1.6e-94 349.7 235 73.6
SGA_v2.0_scaffold7G04149 Striga asiatica HOM05D006563 ORTHO05D008154 1.6e-94 349.7 224 76.3
MSTRG.9682 Avicennia marina HOM05D006563 ORTHO05D008154 1.8e-93 346.3 226 74.8
Migut.D01965 Erythranthe guttata HOM05D006563 ORTHO05D008154 6.8e-93 344.4 225 75.6
Rhsim12G0174600 Rhododendron simsii HOM05D006563 ORTHO05D008154 8.9e-93 344.0 233 74.2
CiPaw.11G007100 Carya illinoinensis HOM05D006563 ORTHO05D008154 2.0e-92 342.8 226 77.9
Glyma.05G048400 Glycine max HOM05D006563 ORTHO05D008154 1.7e-91 339.7 208 82.2
PSO017G5417 Papaver somniferum HOM05D006563 ORTHO05D008154 2.2e-91 339.3 228 73.2
MBI07_g16949_MAGBIO Magnolia biondii HOM05D006563 ORTHO05D008154 1.1e-90 337.0 224 73.7
Lsat_1_v5_gn_1_28920 Lactuca sativa HOM05D006563 ORTHO05D008154 1.4e-90 336.7 224 72.3
Oeu040847.2 Olea europaea HOM05D006563 ORTHO05D008154 3.2e-90 335.5 261 66.7
HPP92_025255 Vanilla planifolia HOM05D006563 ORTHO05D008154 3.2e-90 335.5 228 73.7
Os01g0765000 Oryza sativa ssp. japonica HOM05D006563 ORTHO05D008154 5.4e-90 334.7 232 71.1
AUR62029612 Chenopodium quinoa HOM05D006563 ORTHO05D008154 2.1e-89 332.8 207 77.8
PGR044G0473 Punica granatum HOM05D006563 ORTHO05D008154 4.6e-89 331.6 226 73.5
ATR0561G278 Amborella trichopoda HOM05D006563 ORTHO05D008154 5.1e-88 328.2 209 74.6
EL10Ac5g11412 Beta vulgaris HOM05D006563 ORTHO05D008154 4.3e-87 325.1 210 75.7
Cc09_g04000 Coffea canephora HOM05D006563 ORTHO05D008154 7.3e-87 324.3 244 66.8
CDE05G1358 Ceratophyllum demersum HOM05D006563 ORTHO05D008154 9.6e-87 323.9 208 74.0
Potri.012G097800 Populus trichocarpa HOM05D006563 ORTHO05D008154 4.7e-86 321.6 226 73.9
PSO478G0702 Papaver somniferum HOM05D006563 ORTHO05D008154 1.5e-84 316.6 212 74.5
AUR62034825 Chenopodium quinoa HOM05D006563 ORTHO05D008154 2.6e-84 315.8 207 74.9
unitig_46.g18474 Utricularia gibba HOM05D006563 ORTHO05D008154 1.9e-82 309.7 229 67.2
arahy.Tifrunner.gnm1.ann1.G9M8TR Arachis hypogaea HOM05D006563 ORTHO05D008154 5.4e-82 308.1 219 70.8
arahy.Tifrunner.gnm1.ann1.76974R Arachis hypogaea HOM05D006563 ORTHO05D008154 7.8e-81 304.3 235 68.1
Haze_07139 Corylus avellana HOM05D006563 ORTHO05D008154 3.0e-80 302.4 208 75.5
SEGI_38890 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 4.3e-79 298.5 240 64.6
TPR.G19207 Trifolium pratense HOM05D006563 ORTHO05D008154 3.8e-75 285.4 152 88.2
VMungo1215G3263 Vigna mungo HOM05D006563 ORTHO05D008154 8.4e-75 284.3 175 80.0
DCAR_016389 Daucus carota HOM05D006563 ORTHO05D008154 3.0e-72 275.8 235 62.6
Medtr4g057655 Medicago truncatula HOM05D006563 ORTHO05D008154 3.0e-72 275.8 226 64.6
Sc04g0000170 Simmondsia chinensis HOM05D006563 ORTHO05D008154 8.7e-72 274.2 210 69.0
Pp3c2_32260 Physcomitrium patens HOM05D006563 ORTHO05D008154 1.6e-70 270.0 174 69.0
AagrBONN_evm.TU.Sc2ySwM_228.2386 Anthoceros agrestis HOM05D006563 ORTHO05D008154 1.1e-69 267.3 190 66.8
Zm00001eb370270 Zea mays HOM05D006563 ORTHO05D008154 7.6e-68 261.2 229 60.7
Medtr4g071665 Medicago truncatula HOM05D006563 ORTHO05D008154 4.9e-67 258.5 226 61.9
vmacro16718 Vaccinium macrocarpon HOM05D006563 ORTHO05D008154 1.6e-65 253.4 330 47.0
SMO116G0330 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 2.1e-65 253.1 147 79.6
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 6.2e-62 241.5 226 58.0
Lalb_Chr13g0297241 Lupinus albus HOM05D006563 ORTHO05D008154 3.1e-61 239.2 155 76.1
PRCOL_00002657 Prasinoderma coloniale HOM05D006563 ORTHO05D008154 1.9e-58 229.9 161 64.6
Lj5A96G46 Lonicera japonica HOM05D006563 ORTHO05D008154 2.5e-58 229.6 145 79.3
Cc09_g03990 Coffea canephora HOM05D006563 ORTHO05D008154 1.6e-57 226.9 123 82.9
MCO04G397 Micromonas commoda HOM05D006563 ORTHO05D008154 4.2e-50 202.2 160 58.8
Cre19.g750897 Chlamydomonas reinhardtii HOM05D006563 ORTHO05D008154 1.2e-44 184.1 175 53.7
CBR_g19095 Chara braunii HOM05D006563 ORTHO05D008154 1.4e-42 177.2 134 61.9
Haze_26466 Corylus avellana HOM05D006563 ORTHO05D008154 1.7e-38 163.7 159 48.4
AL1G65740 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 8.2e-30 134.8 63 96.8
Hma1.2p1_0426F.1_g150600 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 5.9e-28 128.6 89 73.0
SMO199G0092 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 2.2e-27 126.7 86 65.1
SMO361G0344 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 4.2e-26 122.5 63 84.1
Hma1.2p1_0426F.1_g150620 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 2.1e-25 120.2 68 86.8
MD06G1141700 Malus domestica HOM05D006563 ORTHO05D008154 8.0e-25 118.2 144 47.9
SEGI_22016 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 6.5e-19 98.6 119 49.6


User provided reference genes

Program Settings