Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 9.4e-77 290.4 182 100.0
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 8.6e-38 161.0 159 83.0
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 3.4e-34 149.1 165 75.8
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 3.5e-31 139.0 155 72.3
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 6.0e-31 138.3 159 76.7
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 1.7e-30 136.7 157 72.6
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 6.6e-30 134.8 159 64.8
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.5e-29 132.9 168 70.8
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 3.3e-29 132.5 156 71.2
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 5.6e-29 131.7 168 70.8
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 9.6e-29 131.0 155 70.3
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.6e-28 130.2 166 63.9
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 3.6e-28 129.0 156 54.5
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 3.6e-28 129.0 157 66.2
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 4.7e-28 128.6 165 67.3
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 8.1e-28 127.9 156 67.3
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 1.1e-27 127.5 166 69.3
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 3.1e-27 125.9 131 77.9
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 4.0e-27 125.6 165 67.9
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 4.0e-27 125.6 162 71.0
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 4.0e-27 125.6 131 75.6
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.9e-27 124.8 162 71.0
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 2.6e-26 122.9 161 64.0
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 7.6e-26 121.3 163 61.3
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 4.9e-25 118.6 166 69.9
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 4.9e-25 118.6 160 59.4
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.4e-24 116.3 167 65.3
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 4.2e-24 115.5 154 69.5
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 9.3e-24 114.4 155 57.4
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 1.2e-23 114.0 154 66.2
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 3.5e-23 112.5 157 66.9
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.7e-22 110.2 157 49.0
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 3.0e-22 109.4 167 62.9
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 1.1e-21 107.5 160 55.0
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 1.5e-21 107.1 158 62.0
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.9e-21 106.7 162 45.1
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 2.5e-21 106.3 166 58.4
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 5.6e-21 105.1 171 52.6
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 7.3e-21 104.8 169 61.5
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 9.6e-21 104.4 159 64.2
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 9.6e-21 104.4 165 63.0
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 2.8e-20 102.8 146 67.1
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 2.8e-20 102.8 169 60.9
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 3.6e-20 102.4 164 54.3
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 3.6e-20 102.4 156 61.5
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 4.8e-20 102.1 166 57.8
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 4.8e-20 102.1 166 57.8
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 6.2e-20 101.7 156 60.9
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 8.1e-20 101.3 133 69.2
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 1.1e-19 100.9 151 66.9
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.4e-19 100.5 132 50.0
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.4e-19 100.5 157 65.6
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.8e-19 100.1 166 63.9
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.4e-19 99.8 149 43.6
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.4e-19 99.8 158 63.9
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.4e-19 99.8 158 63.9
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 5.3e-19 98.6 155 67.7
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 9.0e-19 97.8 152 42.8
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 9.0e-19 97.8 155 52.9
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 1.2e-18 97.4 142 61.3
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 1.2e-18 97.4 155 51.6
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.5e-18 97.1 156 62.8
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.5e-18 97.1 152 42.8
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.6e-18 96.3 150 44.0
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.5e-18 95.5 150 50.0
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 4.5e-18 95.5 92 90.2
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 5.8e-18 95.1 127 74.0
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 5.8e-18 95.1 150 43.3
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 7.6e-18 94.7 157 42.0
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 7.6e-18 94.7 151 65.6
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 9.9e-18 94.4 140 48.6
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 9.9e-18 94.4 139 69.1
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 1.3e-17 94.0 167 51.5
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 1.3e-17 94.0 167 57.5
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 1.3e-17 94.0 151 64.9
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.7e-17 93.6 128 75.0
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 2.2e-17 93.2 153 64.1
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.2e-17 93.2 150 42.7
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 2.2e-17 93.2 154 64.3
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 2.2e-17 93.2 163 58.3
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.9e-17 92.8 175 38.3
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 6.4e-17 91.7 156 51.9
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 6.4e-17 91.7 156 60.9
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 8.4e-17 91.3 129 45.7
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 1.1e-16 90.9 162 58.6
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.4e-16 90.5 153 58.8
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.9e-16 90.1 157 42.0
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.9e-16 90.1 157 42.0
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 1.9e-16 90.1 129 44.2
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 3.2e-16 89.4 151 65.6
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 3.2e-16 89.4 129 44.2
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 4.2e-16 89.0 153 56.9
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 4.2e-16 89.0 153 47.7
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 5.4e-16 88.6 129 44.2
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 5.4e-16 88.6 134 62.7
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 7.1e-16 88.2 159 40.9
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 9.3e-16 87.8 129 43.4
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 9.3e-16 87.8 129 43.4
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 9.3e-16 87.8 129 43.4
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 9.3e-16 87.8 155 60.0
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.2e-15 87.4 129 45.7
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.2e-15 87.4 129 45.7
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 1.2e-15 87.4 129 45.0
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 2.1e-15 86.7 165 55.8
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 2.1e-15 86.7 152 55.9
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 3.5e-15 85.9 159 60.4
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 3.5e-15 85.9 155 51.0
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 3.5e-15 85.9 181 38.7
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 1.0e-14 84.3 135 60.0
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 1.0e-14 84.3 135 57.8
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 2.3e-14 83.2 108 53.7
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 3.9e-14 82.4 128 59.4
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 5.1e-14 82.0 87 52.9
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 6.7e-14 81.6 175 56.0
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 1.9e-13 80.1 129 42.6
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 3.3e-13 79.3 161 51.6
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 4.3e-13 79.0 101 54.5
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 4.3e-13 79.0 94 50.0
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 2.1e-12 76.6 189 51.9
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.1e-12 76.6 128 44.5
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 2.8e-12 76.3 131 43.5
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 6.2e-12 75.1 150 54.7
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.0e-11 72.4 94 45.7
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 2.6e-10 69.7 133 39.8
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 3.4e-10 69.3 153 39.9
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 3.4e-10 69.3 84 45.2
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 5.8e-10 68.6 102 49.0
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 9.9e-10 67.8 87 47.1
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 1.3e-09 67.4 74 55.4
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 4.9e-09 65.5 155 49.0
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 6.4e-09 65.1 159 56.0
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 3.2e-08 62.8 130 34.6
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 2.7e-07 59.7 133 55.6
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 2.3e-06 56.6 126 56.3


User provided reference genes

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