Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 3.5e-255 884.4 432 100.0
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 9.7e-197 690.3 430 80.0
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 9.4e-176 620.5 373 81.2
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 1.8e-166 589.7 429 72.0
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.3e-164 583.6 431 70.8
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.4e-163 580.1 424 71.0
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.2e-162 577.0 422 71.8
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.5e-162 575.5 430 69.8
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 1.1e-155 553.9 425 67.1
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 5.0e-153 545.0 447 63.1
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 1.9e-152 543.1 441 64.2
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 3.7e-148 528.9 431 64.0
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 4.3e-136 488.8 432 59.0
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 4.3e-136 488.8 435 60.5
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 3.6e-135 485.7 434 59.0
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 7.6e-133 478.0 430 59.3
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 1.1e-131 474.2 458 58.5
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 4.2e-131 472.2 438 57.5
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 1.7e-129 466.8 418 58.6
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 2.5e-128 463.0 425 58.1
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 7.3e-128 461.5 417 58.0
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 7.3e-128 461.5 417 58.0
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 9.6e-128 461.1 426 58.0
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 6.9e-126 454.9 434 55.3
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 2.0e-125 453.4 433 58.2
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 2.6e-125 453.0 427 59.7
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 5.8e-125 451.8 430 57.2
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 1.4e-123 447.2 430 56.7
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 2.1e-122 443.4 444 54.3
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.5e-122 442.6 436 58.5
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 2.3e-121 439.9 435 55.4
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 2.8e-119 433.0 445 53.0
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 1.4e-118 430.6 430 55.3
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 1.2e-117 427.6 466 53.4
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 2.0e-117 426.8 421 55.6
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 2.0e-117 426.8 420 55.7
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 2.0e-117 426.8 414 56.8
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 5.8e-117 425.2 434 56.7
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 1.3e-116 424.1 435 51.3
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 3.8e-116 422.5 426 55.4
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 1.6e-114 417.2 433 53.6
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 6.7e-113 411.8 420 53.6
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 6.2e-111 405.2 431 55.9
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 1.1e-110 404.4 439 52.4
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 1.1e-110 404.4 434 52.1
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 4.5e-109 399.1 442 52.3
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 1.7e-108 397.1 446 52.0
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 2.2e-108 396.7 427 52.0
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 3.2e-107 392.9 432 52.8
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 2.7e-106 389.8 406 57.6
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 3.5e-106 389.4 435 52.6
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 3.5e-106 389.4 441 50.1
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 3.5e-106 389.4 430 51.9
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 2.8e-103 379.8 472 47.0
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 3.7e-103 379.4 431 49.0
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 3.1e-102 376.3 430 48.8
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 1.5e-101 374.0 437 48.7
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 2.0e-101 373.6 422 49.1
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 2.6e-101 373.2 422 48.8
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 5.8e-101 372.1 434 48.4
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 1.7e-100 370.5 419 49.2
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 2.2e-100 370.2 419 48.0
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 3.8e-100 369.4 436 47.7
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 3.2e-99 366.3 419 50.1
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 2.7e-98 363.2 429 47.8
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 6.1e-98 362.1 413 51.8
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 1.9e-96 357.1 232 76.3
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 1.3e-95 354.4 441 48.5
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 8.2e-95 351.7 439 46.5
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 1.8e-94 350.5 461 42.7
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 4.5e-93 345.9 432 46.3
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 2.9e-92 343.2 416 48.3
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 2.1e-90 337.0 430 46.7
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 1.4e-89 334.3 439 46.5
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 3.9e-89 332.8 457 44.4
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 4.3e-88 329.3 451 43.9
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 3.7e-87 326.2 451 43.9
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 5.3e-86 322.4 418 45.7
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 2.6e-85 320.1 427 46.1
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 3.2e-83 313.2 450 42.7
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 6.1e-82 308.9 540 39.1
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 3.9e-81 306.2 453 43.0
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 6.7e-81 305.4 444 42.3
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 2.5e-75 287.0 268 57.1
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 4.2e-75 286.2 256 56.6
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 4.2e-75 286.2 419 39.9
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 4.7e-74 282.7 333 52.0
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 6.1e-74 282.3 257 59.9
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 1.4e-70 271.2 219 61.2
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 1.4e-70 271.2 429 40.6
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 1.2e-66 258.1 193 72.0
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 4.7e-66 256.1 436 38.1
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 5.2e-65 252.7 328 49.1
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 4.1e-62 243.0 173 64.2
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 5.9e-61 239.2 328 44.5
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.7e-60 237.7 165 64.8
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 8.5e-60 235.3 439 34.2
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 3.2e-59 233.4 265 56.2
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 1.8e-54 217.6 174 58.6
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 1.6e-53 214.5 159 72.3
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 9.5e-51 205.3 154 70.1
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.1e-50 204.1 154 70.1
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 4.7e-50 203.0 126 72.2
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 6.8e-49 199.1 425 32.7
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 1.5e-48 198.0 169 62.7
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 1.3e-47 194.9 155 69.0
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 1.7e-47 194.5 159 58.5
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.4e-46 190.7 163 63.8
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 1.5e-43 181.4 301 40.5
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 1.5e-43 181.4 197 47.2
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 1.8e-41 174.5 245 45.7
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 6.8e-41 172.6 417 32.1
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 8.9e-41 172.2 487 30.6
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 5.8e-40 169.5 246 43.1
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 5.8e-40 169.5 246 43.1
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 8.3e-39 165.6 176 55.7
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.1e-38 165.2 131 58.8
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 6.6e-36 156.0 113 56.6
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 1.5e-35 154.8 209 47.4
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 7.3e-35 152.5 279 41.6
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 2.6e-32 144.1 121 63.6
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.7e-31 141.4 244 40.6
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.7e-31 141.4 141 56.0
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 7.8e-29 132.5 141 41.1
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 7.3e-27 125.9 341 30.5
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 5.8e-24 116.3 128 36.7
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 5.8e-24 116.3 153 43.8
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 7.6e-24 115.9 160 45.0
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.1e-22 112.1 235 34.9
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 1.0e-20 105.5 140 46.4
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 4.2e-14 83.6 159 39.6
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 2.1e-13 81.3 168 35.1
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 1.7e-12 78.2 75 61.3
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 6.2e-10 69.7 71 49.3
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 1.7e-07 61.6 108 37.0


User provided reference genes

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