Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G148200 Prunus persica HOM05D007269 ORTHO05D008531 5.9e-102 374.4 215 100.0
MD14G1153300 Malus domestica HOM05D007269 ORTHO05D008531 3.4e-57 225.7 207 69.1
MD06G1137900 Malus domestica HOM05D007269 ORTHO05D008531 3.9e-53 212.2 208 62.5
RcHm_v2.0_Chr7g0189701 Rosa chinensis HOM05D007269 ORTHO05D008531 8.0e-51 204.5 226 54.9
FAN28G2669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.7e-45 186.8 217 53.5
FvH4_5g08680 Fragaria vesca HOM05D007269 ORTHO05D008531 3.9e-45 185.7 217 53.0
FAN18G2199 Fragaria x ananassa HOM05D007269 ORTHO05D008531 3.9e-45 185.7 217 53.0
FAN08G0669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.9e-44 183.3 226 51.8
FAN06G3947 Fragaria x ananassa HOM05D007269 ORTHO05D008531 3.6e-43 179.1 217 52.5
FAN13G1779 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.4e-42 177.2 225 50.2
QL10p002347 Quercus lobata HOM05D007269 ORTHO05D008531 3.9e-29 132.5 203 46.8
Sabra12G0074700 Salix brachista HOM05D001095 ORTHO05D000976 1.5e-28 130.6 212 41.5
Potri.015G099800 Populus trichocarpa HOM05D007269 ORTHO05D008531 5.6e-28 128.6 211 40.3
Potri.012G101800 Populus trichocarpa HOM05D007269 ORTHO05D008531 2.1e-27 126.7 205 41.0
FAN15G2538 Fragaria x ananassa HOM05D007269 ORTHO05D008531 5.2e-26 122.1 156 51.3
COL.COLO4_36213 Corchorus olitorius HOM05D007269 ORTHO05D008531 2.6e-25 119.8 207 40.1
Sabra15G0120500 Salix brachista HOM05D007269 ORTHO05D008531 9.9e-25 117.9 204 40.7
CiPaw.11G004900 Carya illinoinensis HOM05D007269 ORTHO05D008531 1.7e-24 117.1 209 41.1
Duzib084G1105 Durio zibethinus HOM05D007269 ORTHO05D008531 3.8e-24 115.9 206 40.3
Thecc.03G133000 Theobroma cacao HOM05D007269 ORTHO05D008531 8.4e-24 114.8 209 39.7
Manes.14G048800 Manihot esculenta HOM05D007269 ORTHO05D008531 1.1e-23 114.4 208 40.4
Ciclev10032833m.g Citrus clementina HOM05D007269 ORTHO05D008531 3.5e-22 109.4 194 38.7
Duzib068G0517 Durio zibethinus HOM05D007269 ORTHO05D008531 8.7e-21 104.8 206 35.9
Nn4g22252 Nelumbo nucifera HOM05D007269 ORTHO05D008531 2.1e-19 100.1 207 39.1
PSO017G6998 Papaver somniferum HOM05D007269 ORTHO05D008531 1.1e-18 97.8 204 34.8
TAR374G0918 Trochodendron aralioides HOM05D007269 ORTHO05D008531 1.1e-18 97.8 154 42.9
Atru.chr6.1845 Acer truncatum HOM05D007269 ORTHO05D008531 3.1e-18 96.3 205 39.5
HanXRQChr05g0153821 Helianthus annuus HOM05D007269 ORTHO05D008531 9.0e-18 94.7 236 32.2
Nn3g16393 Nelumbo nucifera HOM05D007269 ORTHO05D008531 1.2e-17 94.4 211 43.1
Potri.001G059800 Populus trichocarpa HOM05D007269 ORTHO05D008531 2.6e-17 93.2 224 35.3
Phvul.002G285300 Phaseolus vulgaris HOM05D007269 ORTHO05D008531 3.4e-17 92.8 208 35.1
Aqoxy3G01626 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 4.5e-17 92.4 128 47.7
Aqoxy5G03286 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 4.5e-17 92.4 214 34.6
Gohir.A12G190800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 4.5e-17 92.4 207 36.2
Lalb_Chr07g0183561 Lupinus albus HOM05D007269 ORTHO05D008531 4.5e-17 92.4 206 32.0
HanXRQChr08g0236471 Helianthus annuus HOM05D007269 ORTHO05D008531 5.8e-17 92.0 236 32.2
HanXRQChr09g0273431 Helianthus annuus HOM05D007269 ORTHO05D008531 9.9e-17 91.3 214 35.5
CSS0016059 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 1.3e-16 90.9 218 33.5
QL03p051584 Quercus lobata HOM05D007269 ORTHO05D008531 1.7e-16 90.5 237 35.0
Gorai.008G207700 Gossypium raimondii HOM05D007269 ORTHO05D008531 3.8e-16 89.4 207 35.7
Nitab4.5_0000021g1020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 3.8e-16 89.4 142 40.8
Sopen03g028190 Solanum pennellii HOM05D007269 ORTHO05D008531 3.8e-16 89.4 213 34.3
Haze_07172 Corylus avellana HOM05D007269 ORTHO05D008531 4.9e-16 89.0 171 40.9
Gohir.D12G192900 Gossypium hirsutum HOM05D007269 ORTHO05D008531 6.4e-16 88.6 207 35.7
Lalb_Chr13g0297191 Lupinus albus HOM05D007269 ORTHO05D008531 6.4e-16 88.6 209 33.5
Lsat_1_v5_gn_4_82360 Lactuca sativa HOM05D007269 ORTHO05D008531 2.4e-15 86.7 216 32.4
Cfa018768 Carpinus fangiana HOM05D007269 ORTHO05D008531 3.2e-15 86.3 164 39.6
Nitab4.5_0002530g0020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 3.2e-15 86.3 230 31.3
CAN.G732.21 Capsicum annuum HOM05D007269 ORTHO05D008531 4.2e-15 85.9 207 33.8
TAR622G0366 Trochodendron aralioides HOM05D007269 ORTHO05D008531 2.1e-14 83.6 175 44.6
DCAR_021638 Daucus carota HOM05D007269 ORTHO05D008531 3.5e-14 82.8 258 30.6
Lj4g0016206 Lotus japonicus HOM05D007269 ORTHO05D008531 6.0e-14 82.0 209 32.1
PGSC0003DMG400026484 Solanum tuberosum HOM05D007269 ORTHO05D008531 1.0e-13 81.3 96 43.8
Sc22g0003750 Simmondsia chinensis HOM05D007269 ORTHO05D008531 1.3e-13 80.9 99 46.5
Solyc03g097430.1 Solanum lycopersicum HOM05D007269 ORTHO05D008531 1.8e-13 80.5 222 30.6
MBI07_g46909_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 2.3e-13 80.1 161 37.9
Manes.12G008000 Manihot esculenta HOM05D007269 ORTHO05D008531 3.9e-13 79.3 212 37.7
Sabra03G0123300 Salix brachista HOM05D007269 ORTHO05D008531 3.9e-13 79.3 224 32.1
Manes.13G008500 Manihot esculenta HOM05D007269 ORTHO05D008531 5.1e-13 79.0 214 35.0
Cpa.g.sc4.165 Carica papaya HOM05D007269 ORTHO05D008531 8.7e-13 78.2 215 32.6
DCAR_021637 Daucus carota HOM05D007269 ORTHO05D008531 1.1e-12 77.8 216 32.4
Rhsim12G0177300 Rhododendron simsii HOM05D007269 ORTHO05D008531 1.1e-12 77.8 145 36.6
CiPaw.06G105600 Carya illinoinensis HOM05D007269 ORTHO05D008531 4.3e-12 75.9 241 32.4
CSS0011599 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 7.4e-12 75.1 208 37.5
ECA232G3539 Erigeron canadensis HOM05D007269 ORTHO05D008531 1.8e-10 70.5 156 32.7
CiPaw.05G106700 Carya illinoinensis HOM05D007269 ORTHO05D008531 2.4e-10 70.1 241 32.4
TPR.G28777 Trifolium pratense HOM05D007269 ORTHO05D008531 3.1e-10 69.7 213 32.4
Potri.003G168200 Populus trichocarpa HOM05D007269 ORTHO05D008531 4.0e-10 69.3 125 44.8
Thecc.02G201200 Theobroma cacao HOM05D007269 ORTHO05D008531 5.3e-10 68.9 157 35.7
ATR0582G094 Amborella trichopoda HOM05D007269 ORTHO05D008531 1.2e-09 67.8 204 30.4
PGR119G1209 Punica granatum HOM05D007269 ORTHO05D008531 1.5e-09 67.4 221 27.6
Cc11_g17250 Coffea canephora HOM05D007269 ORTHO05D008531 2.0e-09 67.0 243 32.9
CANSAT01G1989 Cannabis sativa HOM05D007269 ORTHO05D008531 2.6e-09 66.6 229 27.9
RcHm_v2.0_Chr4g0429751 Rosa chinensis HOM05D007269 ORTHO05D008531 3.4e-09 66.2 233 35.2
Psat7g036960 Pisum sativum HOM05D007269 ORTHO05D008531 1.3e-08 64.3 217 32.7
Rhsim12G0176800 Rhododendron simsii HOM05D007269 ORTHO05D008531 1.1e-07 61.2 154 42.9
MSTRG.7284 Avicennia marina HOM05D007269 ORTHO05D008531 1.4e-07 60.8 230 29.6
Medtr8g096640 Medicago truncatula HOM05D007269 ORTHO05D008531 4.2e-07 59.3 227 31.3
FvH4_4g23360 Fragaria vesca HOM05D007269 ORTHO05D008531 5.5e-07 58.9 159 34.0
MD16G1123500 Malus domestica HOM05D007269 ORTHO05D008531 5.5e-07 58.9 235 33.2
Migut.M01219 Erythranthe guttata HOM05D007269 ORTHO05D008531 2.1e-06 57.0 252 27.4
Gohir.D01G020800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 2.1e-06 57.0 165 37.0
Zm00001eb364140 Zea mays HOM05D007269 ORTHO05D008531 2.1e-06 57.0 92 39.1
Dinv23173 Davidia involucrata HOM05D007269 ORTHO05D008531 2.7e-06 56.6 174 33.3
CDE05G2305 Ceratophyllum demersum HOM05D007269 ORTHO05D008531 3.5e-06 56.2 150 32.7
Prupe.1G222200 Prunus persica HOM05D007269 ORTHO05D008531 3.5e-06 56.2 137 32.8
VMungo0251G2992 Vigna mungo HOM05D031312 ORTHO05D008531 3.5e-06 56.2 165 33.3
Zm00001eb142990 Zea mays HOM05D007269 ORTHO05D008531 3.5e-06 56.2 213 34.7
Gorai.002G023300 Gossypium raimondii HOM05D007269 ORTHO05D008531 4.6e-06 55.8 166 34.9
Oeu001326.1 Olea europaea HOM05D007269 ORTHO05D008531 4.6e-06 55.8 207 27.5
Oeu001327.1 Olea europaea HOM05D007269 ORTHO05D008531 4.6e-06 55.8 207 27.5
Ciclev10032794m.g Citrus clementina HOM05D007269 ORTHO05D008531 6.0e-06 55.5 199 33.2


User provided reference genes

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