Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.3e-38 162.5 79 100.0
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 4.1e-37 157.5 79 96.2
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.6e-36 155.6 79 94.9
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 8.1e-33 143.3 77 83.1
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 3.1e-32 141.4 79 86.1
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 4.0e-32 141.0 79 84.8
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 8.9e-32 139.8 79 84.8
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.2e-31 139.4 79 81.0
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.0e-31 138.7 79 79.7
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 5.8e-31 137.1 79 82.3
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 7.6e-31 136.7 79 77.2
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 7.6e-31 136.7 79 78.5
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.7e-30 135.6 79 78.5
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.7e-30 135.6 79 77.2
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 2.2e-30 135.2 79 79.7
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 2.9e-30 134.8 76 80.3
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 2.9e-30 134.8 79 79.7
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 2.9e-30 134.8 79 74.7
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 3.8e-30 134.4 79 78.5
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.9e-30 134.0 79 77.2
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.1e-29 132.9 79 77.2
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.1e-29 132.9 79 75.9
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 1.4e-29 132.5 76 80.3
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 1.4e-29 132.5 79 77.2
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.4e-29 132.5 79 75.9
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.9e-29 132.1 77 79.2
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 79.7
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 75.9
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.4e-29 131.7 77 77.9
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 77.2
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 77.2
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 74.7
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 74.7
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 75.9
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.2e-29 131.3 79 75.9
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.1e-29 131.0 79 77.2
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 7.1e-29 130.2 76 78.9
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 7.1e-29 130.2 76 78.9
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.1e-29 130.2 86 73.3
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 7.1e-29 130.2 79 73.4
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 7.1e-29 130.2 79 75.9
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 7.1e-29 130.2 77 76.6
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 9.2e-29 129.8 78 76.9
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 75.9
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 73.4
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 78.5
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 74.7
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 73.4
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 73.4
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.6e-28 129.0 76 77.6
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 75.9
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 72.2
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 6.0e-28 127.1 79 72.2
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 6.0e-28 127.1 76 78.9
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 7.8e-28 126.7 75 73.3
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.0e-27 126.3 79 72.2
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 1.0e-27 126.3 75 74.7
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 1.7e-27 125.6 79 73.4
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 70.9
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.3e-27 125.2 77 75.3
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 73.4
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 3.0e-27 124.8 74 78.4
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 3.0e-27 124.8 74 78.4
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 72.2
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 3.9e-27 124.4 80 75.0
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 5.1e-27 124.0 75 73.3
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 5.1e-27 124.0 79 70.9
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 5.1e-27 124.0 79 72.2
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 8.7e-27 123.2 78 71.8
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 8.7e-27 123.2 78 71.8
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 1.5e-26 122.5 79 70.9
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 70.9
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.3e-26 121.3 78 71.8
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 3.3e-26 121.3 79 70.9
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 3.3e-26 121.3 101 59.4
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 70.9
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 68.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 70.9
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 4.3e-26 120.9 77 68.8
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 5.6e-26 120.6 76 73.7
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 5.6e-26 120.6 80 71.2
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 68.4
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 7.3e-26 120.2 80 71.2
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 9.6e-26 119.8 76 73.7
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 68.4
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 68.4
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 2.8e-25 118.2 75 72.0
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 2.8e-25 118.2 75 72.0
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.6e-25 117.9 76 68.4
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 8.1e-25 116.7 77 67.5
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.4e-24 115.9 76 71.1
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 4.0e-24 114.4 75 68.0
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 4.0e-24 114.4 75 68.0
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 4.0e-24 114.4 75 68.0
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 4.0e-24 114.4 75 68.0
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 4.0e-24 114.4 79 63.3
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 4.0e-24 114.4 63 82.5
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 5.2e-24 114.0 79 63.3
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 5.2e-24 114.0 78 65.4
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 6.9e-24 113.6 63 82.5
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.2e-23 112.8 79 62.0
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.2e-23 112.8 72 68.1
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 62.0
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 62.0
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 62.0
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 62.0
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 2.0e-23 112.1 65 78.5
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 5.8e-23 110.5 79 60.8
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 5.8e-23 110.5 61 80.3
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 7.6e-23 110.2 115 50.4
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 9.9e-23 109.8 73 69.9
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.3e-22 109.4 70 67.1
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.7e-22 109.0 61 78.7
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.7e-22 109.0 63 79.4
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.2e-22 108.6 69 69.6
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 57.0
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 6.4e-22 107.1 79 57.0
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 6.4e-22 107.1 79 58.2
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.1e-21 106.3 79 62.0
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.4e-21 105.9 64 71.9
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.4e-21 105.9 66 74.2
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.2e-20 102.8 57 84.2
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.7e-20 101.7 79 55.7
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 2.7e-20 101.7 66 66.7
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 4.6e-20 100.9 57 78.9
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 7.8e-20 100.1 61 70.5
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.0e-19 99.8 67 62.7
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.9e-19 97.8 76 53.9
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 3.9e-19 97.8 73 58.9
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.1e-19 97.4 73 56.2
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 8.7e-19 96.7 54 77.8
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 8.7e-19 96.7 55 76.4
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.1e-18 96.3 73 54.8
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.5e-18 95.9 74 54.1
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.3e-17 92.8 59 64.4
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 2.1e-17 92.0 65 63.1
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 3.6e-17 91.3 65 61.5
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 6.2e-17 90.5 69 58.0
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 6.2e-17 90.5 53 69.8
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 1.3e-14 82.8 59 59.3
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 7.1e-13 77.0 67 53.7
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.6e-12 74.3 70 51.4
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.8e-11 72.4 73 45.2
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 3.0e-11 71.6 48 66.7
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.8e-09 65.1 79 38.0
FAN18G4143 Fragaria x ananassa HOM05D005222 ORTHO05D006230 8.4e-06 53.5 79 39.2


User provided reference genes

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