Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 6.4e-291 1003.4 532 100.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 9.6e-247 856.7 561 79.3
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.8e-243 844.7 523 82.2
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.2e-227 792.3 559 76.4
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.2e-226 788.1 559 76.0
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.1e-225 785.8 538 77.0
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 8.2e-222 773.9 559 74.6
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.5e-215 753.1 518 75.3
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 4.1e-213 745.0 517 72.9
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 1.6e-209 733.0 509 73.7
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 6.8e-208 727.6 515 73.2
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 9.1e-205 717.2 513 70.2
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 3.5e-204 715.3 505 72.3
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 3.8e-203 711.8 508 70.5
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 8.5e-203 710.7 510 71.0
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 8.5e-203 710.7 557 66.4
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 4.2e-202 708.4 553 68.9
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.1e-201 704.5 596 66.8
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.0e-200 703.7 514 69.8
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 2.3e-200 702.6 526 68.3
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.2e-199 700.3 556 65.3
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.5e-199 699.9 509 70.9
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 7.5e-199 697.6 528 68.9
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 9.8e-199 697.2 482 74.1
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.3e-198 696.8 527 66.6
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 8.3e-198 694.1 514 69.3
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.1e-197 693.7 514 70.2
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.4e-197 691.4 508 69.9
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.2e-196 690.3 548 66.6
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 7.7e-196 687.6 514 68.9
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 3.8e-195 685.3 504 69.4
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 5.0e-195 684.9 516 69.2
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 6.6e-195 684.5 525 66.5
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 8.6e-195 684.1 516 69.2
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.1e-194 683.7 600 60.8
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.9e-194 682.9 505 69.3
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.2e-193 680.2 539 65.9
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.5e-191 673.3 514 67.3
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.7e-190 668.7 527 67.2
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 2.3e-187 659.4 561 62.9
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 5.6e-186 654.8 511 67.1
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 5.6e-186 654.8 559 61.9
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 6.1e-185 651.4 546 63.4
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 8.0e-185 651.0 558 62.2
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.8e-184 647.9 515 65.6
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 2.6e-183 646.0 520 65.8
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.6e-183 646.0 515 65.4
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.6e-183 646.0 559 59.6
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 3.4e-183 645.6 559 61.5
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 4.4e-183 645.2 536 63.1
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 7.5e-183 644.4 515 65.2
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 9.8e-183 644.0 526 64.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 3.7e-182 642.1 559 59.0
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.1e-181 640.6 509 65.0
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.4e-181 640.2 529 62.9
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.1e-181 638.6 557 59.8
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 4.1e-181 638.6 564 59.4
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.8e-180 634.4 559 59.2
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.3e-179 633.6 553 61.7
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 2.3e-179 632.9 535 61.5
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 3.9e-179 632.1 407 77.1
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 6.6e-179 631.3 515 64.3
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.1e-178 630.6 592 60.0
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 4.3e-178 628.6 584 62.2
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.8e-177 625.9 502 64.7
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.2e-177 624.8 529 62.2
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.3e-174 617.1 507 63.1
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.1e-173 614.0 486 64.2
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 4.1e-173 612.1 590 59.2
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 9.2e-173 610.9 562 60.0
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.2e-172 610.5 500 63.6
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.2e-172 610.5 484 64.9
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 7.8e-172 607.8 469 66.1
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.6e-169 600.1 518 61.4
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.1e-168 597.4 546 58.6
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.8e-168 596.7 509 62.3
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.1e-168 595.9 527 61.3
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 4.0e-168 595.5 494 62.3
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 4.0e-168 595.5 489 63.4
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.2e-168 595.1 495 63.0
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 8.9e-168 594.3 513 61.0
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.5e-167 593.6 555 58.0
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.5e-167 593.6 504 61.7
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.6e-167 592.8 502 60.8
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 4.4e-167 592.0 502 60.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 4.4e-167 592.0 533 60.2
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.7e-166 590.1 513 61.4
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.1e-165 587.4 537 59.0
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 2.1e-164 583.2 516 60.7
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.8e-164 581.3 368 73.1
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.3e-163 580.5 368 73.1
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.3e-163 580.5 504 61.7
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.7e-163 580.1 497 62.0
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.2e-161 571.6 541 56.7
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.5e-159 567.0 481 61.7
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.7e-158 563.5 539 56.2
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 2.4e-157 559.7 528 57.4
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 8.7e-155 551.2 556 52.7
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.1e-154 550.8 502 57.8
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.3e-153 547.4 518 58.5
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.1e-153 546.6 521 57.0
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.1e-152 544.3 555 52.6
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.4e-152 543.9 397 66.8
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.3e-150 537.3 373 70.5
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 4.6e-148 528.9 490 56.1
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 3.0e-147 526.2 496 56.7
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 5.6e-146 521.9 491 56.4
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 5.6e-146 521.9 514 53.7
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 7.6e-143 511.5 460 57.0
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 7.6e-143 511.5 298 79.5
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 2.4e-141 506.5 517 52.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.0e-139 501.1 512 52.1
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.5e-138 497.3 431 60.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 9.6e-138 494.6 513 54.6
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.1e-136 489.6 298 80.5
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.0e-134 484.6 494 51.2
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.9e-134 482.3 322 70.5
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 8.4e-134 481.5 503 51.7
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.3e-131 473.4 314 70.1
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.8e-129 466.5 523 51.8
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.8e-123 447.2 399 58.6
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 8.7e-123 444.9 471 51.6
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 7.4e-122 441.8 485 52.2
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.2e-117 425.2 399 56.4
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 6.7e-115 418.7 354 55.1
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.1e-114 417.9 360 53.9
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 7.4e-114 415.2 452 50.2
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.7e-113 414.1 360 53.6
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 1.4e-112 411.0 536 42.5
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 4.1e-112 409.5 372 53.5
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 9.1e-112 408.3 423 48.9
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 4.5e-111 406.0 537 42.3
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 4.5e-111 406.0 537 42.3
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.7e-110 404.1 551 42.3
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 2.9e-110 403.3 543 40.9
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 6.5e-110 402.1 548 42.3
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 8.5e-110 401.7 380 51.6
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.7e-108 396.0 278 63.7
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 3.0e-107 393.3 557 40.8
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 3.0e-107 393.3 557 40.8
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.1e-107 392.5 587 40.4
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.5e-106 391.0 550 40.5
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.5e-106 391.0 550 40.5
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 4.4e-106 389.4 407 50.9
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 5.3e-104 382.5 451 47.7
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.5e-103 379.8 298 56.4
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 2.9e-102 376.7 511 41.7
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.6e-100 370.9 227 73.6
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.4e-91 341.3 399 51.1
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.0e-91 340.1 208 75.0
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.7e-89 334.3 208 73.6
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 6.3e-81 305.8 298 50.0
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 7.5e-74 282.3 565 40.7
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 5.9e-71 272.7 291 56.7
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 8.0e-68 262.3 325 51.1
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.2e-55 221.9 525 34.7
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.6e-55 221.5 284 48.2
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 3.9e-54 216.9 526 37.6
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.9e-53 214.5 163 63.2
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.9e-49 200.7 240 54.2
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 7.1e-48 196.1 124 74.2
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.0e-42 177.9 260 36.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 3.2e-40 170.6 137 58.4
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.5e-39 167.2 102 75.5
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.3e-35 153.3 83 85.5
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 7.9e-31 139.4 82 76.8
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 7.4e-29 132.9 103 58.3
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.5e-26 125.2 67 86.6
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 4.9e-25 120.2 65 86.2
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 9.3e-24 115.9 93 61.3
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.9e-19 99.8 220 37.7
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 9.0e-19 99.4 209 38.3
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.5e-13 82.0 230 33.5
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 2.1e-07 61.6 151 38.4
Aa31LG3G7440 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.3e-06 58.2 55 56.4


User provided reference genes

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