Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 7.0e-90 334.0 172 100.0
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.3e-59 233.4 180 73.9
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 1.4e-58 229.9 184 71.2
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 1.4e-45 186.8 164 64.6
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.1e-42 177.2 175 65.1
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 1.9e-42 176.4 177 64.4
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.9e-42 176.4 172 63.4
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.5e-42 174.9 174 63.8
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.1e-39 167.2 167 61.1
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 2.2e-35 152.9 167 52.7
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.2e-35 152.9 174 50.6
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 2.5e-34 149.4 151 55.6
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 5.5e-34 148.3 142 56.3
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 3.5e-33 145.6 139 55.4
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 4.6e-33 145.2 142 54.9
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 6.0e-33 144.8 149 54.4
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.3e-32 143.7 140 54.3
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 2.3e-32 142.9 147 58.5
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 3.9e-32 142.1 129 56.6
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 3.9e-32 142.1 129 56.6
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 5.1e-32 141.7 149 55.0
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 6.7e-32 141.4 149 49.7
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 1.9e-31 139.8 148 54.1
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 1.9e-31 139.8 135 54.1
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 2.5e-31 139.4 153 50.3
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 2.8e-30 136.0 138 54.3
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 6.3e-30 134.8 134 55.2
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.4e-29 132.9 161 46.0
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 3.1e-29 132.5 142 50.7
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 6.9e-29 131.3 155 49.0
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 6.9e-29 131.3 132 53.8
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 9.0e-29 131.0 155 51.0
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.2e-28 130.6 142 53.5
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 1.5e-28 130.2 175 51.4
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 2.6e-28 129.4 151 49.7
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 5.9e-28 128.3 151 49.7
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 7.6e-28 127.9 121 57.9
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 7.6e-28 127.9 144 50.0
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.7e-27 126.7 138 52.2
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 5.0e-27 125.2 144 52.1
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.1e-26 124.0 138 50.7
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.4e-26 123.6 160 47.5
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 1.9e-26 123.2 155 44.5
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 2.5e-26 122.9 171 46.2
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 3.2e-26 122.5 147 46.9
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 4.2e-26 122.1 145 49.7
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 4.2e-26 122.1 126 50.8
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 4.2e-26 122.1 169 45.0
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 7.2e-26 121.3 168 44.6
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 7.2e-26 121.3 168 44.6
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.6e-25 120.2 145 50.3
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.6e-25 120.2 145 50.3
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.1e-25 119.8 145 50.3
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 2.1e-25 119.8 163 44.2
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 3.6e-25 119.0 158 44.3
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 4.6e-25 118.6 148 49.3
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 6.1e-25 118.2 127 51.2
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 7.9e-25 117.9 155 41.3
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.0e-24 117.5 157 43.9
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.0e-24 117.5 165 46.1
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.3e-24 117.1 173 37.6
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 2.3e-24 116.3 147 46.3
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.3e-24 116.3 128 50.8
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 2.3e-24 116.3 167 40.7
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.7e-24 114.8 127 50.4
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 6.7e-24 114.8 160 41.2
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.5e-23 113.6 134 42.5
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.5e-23 112.8 143 44.1
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 5.7e-23 111.7 153 45.8
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 9.7e-23 110.9 140 45.0
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 9.7e-23 110.9 157 50.3
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 1.7e-22 110.2 151 42.4
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.7e-22 110.2 170 38.8
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.8e-22 109.4 131 48.9
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 2.8e-22 109.4 141 44.7
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 2.8e-22 109.4 160 46.9
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.1e-21 107.5 157 43.9
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.1e-21 107.5 140 45.7
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 1.1e-21 107.5 156 43.6
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 3.1e-21 105.9 137 46.7
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 4.1e-21 105.5 137 47.4
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.1e-21 105.5 155 42.6
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.1e-21 105.5 155 42.6
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 6.9e-21 104.8 167 39.5
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.5e-20 103.6 122 48.4
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 2.0e-20 103.2 118 45.8
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.0e-19 100.9 145 42.8
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.3e-19 100.5 150 41.3
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.3e-19 100.5 133 46.6
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.7e-19 100.1 146 42.5
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 2.2e-19 99.8 139 43.9
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 2.2e-19 99.8 116 50.9
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 5.0e-19 98.6 153 40.5
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 6.5e-19 98.2 103 51.5
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.1e-18 97.4 136 42.6
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 1.4e-18 97.1 122 45.1
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.9e-18 96.7 117 44.4
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.5e-18 96.3 160 38.8
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 4.2e-18 95.5 143 38.5
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 9.4e-18 94.4 137 43.8
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 9.4e-18 94.4 137 43.8
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 9.4e-18 94.4 142 40.8
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.6e-17 93.6 129 40.3
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.6e-17 93.6 128 42.2
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.6e-17 93.6 140 42.1
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.1e-17 93.2 143 39.9
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 2.7e-17 92.8 157 37.6
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.0e-16 90.9 131 42.7
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.8e-16 90.1 146 40.4
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.8e-16 90.1 116 45.7
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 2.3e-16 89.7 144 40.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 2.3e-16 89.7 141 41.1
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 3.0e-16 89.4 144 39.6
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 3.0e-16 89.4 144 39.6
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 5.1e-16 88.6 100 49.0
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 8.8e-16 87.8 127 44.1
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.1e-15 87.4 137 38.7
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 1.1e-15 87.4 126 42.9
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.6e-15 86.3 143 39.2
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 3.3e-15 85.9 134 39.6
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 3.3e-15 85.9 134 39.6
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 4.4e-15 85.5 126 42.1
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 5.7e-15 85.1 127 41.7
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 5.7e-15 85.1 127 41.7
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 5.7e-15 85.1 129 41.1
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 5.7e-15 85.1 127 41.7
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 5.7e-15 85.1 129 41.1
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 1.3e-14 84.0 133 36.8
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 3.7e-14 82.4 138 39.9
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 8.2e-14 81.3 96 40.6
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 3.1e-13 79.3 138 41.3
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 4.5e-12 75.5 69 49.3
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.2e-11 73.2 133 33.8
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.1e-10 70.9 55 61.8
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 9.4e-10 67.8 136 34.6
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.2e-09 67.4 59 52.5
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 2.7e-09 66.2 121 37.2
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 2.7e-09 66.2 87 43.7
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 8.0e-09 64.7 116 36.2
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 1.4e-08 63.9 87 41.4
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.0e-08 62.8 96 39.6
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 3.9e-08 62.4 79 45.6
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 6.7e-08 61.6 143 30.1
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 1.5e-07 60.5 148 29.7
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 2.0e-07 60.1 130 30.8
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 2.6e-07 59.7 116 30.2
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 4.4e-07 58.9 129 31.0
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 4.4e-07 58.9 87 39.1
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 7.4e-07 58.2 140 30.7
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 7.4e-07 58.2 128 30.5
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 9.7e-07 57.8 120 28.3
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.3e-06 57.4 107 35.5
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.3e-06 57.4 133 30.1
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.8e-06 56.2 124 30.6
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.8e-06 56.2 128 30.5
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 2.8e-06 56.2 168 28.0
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 3.7e-06 55.8 78 42.3
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 6.3e-06 55.1 125 32.8
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 6.3e-06 55.1 125 30.4
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 6.3e-06 55.1 149 28.2
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 6.3e-06 55.1 121 29.8
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 8.2e-06 54.7 128 30.5
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 8.2e-06 54.7 166 25.9


User provided reference genes

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