Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 0.0e+00 1454.5 733 100.0
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.3e-220 770.4 741 60.9
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 6.3e-180 635.2 715 54.3
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 3.6e-167 592.8 715 52.2
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 5.2e-166 589.0 713 52.0
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 8.2e-164 581.6 715 51.9
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 3.5e-162 576.2 719 51.5
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.5e-152 543.5 713 49.6
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 1.4e-107 394.8 864 36.8
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 4.9e-92 343.2 895 33.4
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 2.0e-69 268.1 820 31.6
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 2.6e-61 241.1 838 30.0
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.8e-47 193.7 722 29.8
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.1e-46 190.7 726 29.1
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 6.5e-44 183.3 839 27.5
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 5.5e-43 180.3 536 32.5
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 2.0e-40 171.8 386 34.7
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 8.3e-39 166.4 851 27.3
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 2.1e-34 151.8 633 28.4
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.3e-33 148.3 577 27.7
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 4.9e-31 140.6 718 24.1
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 1.7e-28 132.1 478 29.3
Ca_00458_v3 Cicer arietinum L. HOM05D013241 ORTHO05D011012 8.6e-28 129.8 397 29.0
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 1.5e-27 129.0 400 30.8
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.6e-26 125.6 709 25.7
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 1.8e-25 122.1 410 29.8
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 2.0e-24 118.6 402 29.9
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 4.4e-24 117.5 453 25.6
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 5.8e-24 117.1 501 29.1
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 7.5e-24 116.7 670 24.2
Gorai.008G261200 Gossypium raimondii HOM05D011672 ORTHO05D011012 1.7e-23 115.5 673 25.4
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 3.7e-23 114.4 735 24.6
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 6.4e-23 113.6 414 28.3
Medtr2g016640 Medicago truncatula HOM05D013241 ORTHO05D011012 6.4e-23 113.6 419 26.5
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.6e-21 109.0 707 24.9
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 7.8e-21 106.7 745 24.7
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 2.5e-19 101.7 838 24.1
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 3.3e-19 101.3 408 26.5
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 9.5e-19 99.8 408 26.2
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.1e-17 94.7 686 24.6
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 5.2e-17 94.0 424 26.9
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 6.8e-17 93.6 703 23.3
PGR031G2170 Punica granatum HOM05D013249 ORTHO05D011012 6.8e-17 93.6 369 27.9
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 8.9e-17 93.2 709 22.7
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.7e-15 89.0 550 25.1
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 2.2e-15 88.6 718 24.4
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 2.9e-15 88.2 283 27.2
COL.COLO4_10845 Corchorus olitorius HOM05D011672 ORTHO05D011012 3.7e-15 87.8 215 33.5
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 6.4e-15 87.0 782 23.4
Gohir.A12G242700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 8.3e-15 86.7 515 24.5
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.1e-14 86.3 216 30.1
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 2.4e-14 85.1 827 24.3
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 3.2e-14 84.7 792 23.5
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.2e-14 84.7 673 23.0
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 4.1e-14 84.3 400 26.5
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 7.0e-14 83.6 395 27.8
Atru.chr9.1832 Acer truncatum HOM05D011672 ORTHO05D011012 1.6e-13 82.4 128 39.1
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.6e-13 82.4 728 23.6
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.0e-12 79.7 454 25.3
Gohir.D12G243700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 1.7e-12 79.0 778 22.6
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 3.9e-12 77.8 548 24.1
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.9e-12 77.8 707 23.2
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 5.1e-12 77.4 871 22.7
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 6.6e-12 77.0 199 29.6
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 6.6e-12 77.0 216 30.1
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.9e-11 75.5 824 23.2
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.3e-11 74.7 637 24.6
BcaC07g37571 Brassica carinata HOM05D010823 ORTHO05D012736 7.3e-11 73.6 312 26.0
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 7.3e-11 73.6 621 21.7
BolC8t47914H Brassica oleracea HOM05D010823 ORTHO05D012736 9.5e-11 73.2 312 25.6
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 9.5e-11 73.2 463 24.6
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.2e-10 72.8 85 48.2
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.6e-10 72.4 460 24.3
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 2.8e-10 71.6 480 24.4
Psat1g195680 Pisum sativum HOM05D013241 ORTHO05D011012 3.6e-10 71.2 346 28.3
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 3.6e-10 71.2 213 27.7
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 3.6e-10 71.2 416 24.0
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 4.7e-10 70.9 818 22.4
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 6.2e-10 70.5 205 28.8
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 6.2e-10 70.5 205 28.8
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 6.2e-10 70.5 461 24.3
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 8.1e-10 70.1 221 28.1
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 8.1e-10 70.1 88 44.3
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.1e-09 69.7 303 26.4
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.1e-09 69.7 80 48.8
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.1e-09 69.7 794 22.3
CARHR256170 Cardamine hirsuta HOM05D010823 ORTHO05D012736 1.4e-09 69.3 324 25.6
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 1.8e-09 68.9 390 23.3
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 2.3e-09 68.6 213 29.1
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 3.1e-09 68.2 841 23.5
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 3.1e-09 68.2 192 29.7
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 3.1e-09 68.2 176 30.1
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 4.0e-09 67.8 202 28.7
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 4.0e-09 67.8 209 31.1
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 4.0e-09 67.8 200 27.5
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 6.8e-09 67.0 204 32.4
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 6.8e-09 67.0 204 32.4
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 8.9e-09 66.6 196 27.0
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 8.9e-09 66.6 202 29.7
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 8.9e-09 66.6 215 24.7
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 8.9e-09 66.6 200 27.5
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.2e-08 66.2 462 22.1
Potri.004G080501 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.2e-08 66.2 80 48.8
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 1.5e-08 65.9 199 27.1
BraA08t32888Z Brassica rapa HOM05D010823 ORTHO05D012736 2.0e-08 65.5 180 30.0
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 2.0e-08 65.5 457 23.6
THA.LOC104815458 Tarenaya hassleriana HOM05D010823 ORTHO05D012736 2.0e-08 65.5 219 30.1
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 2.6e-08 65.1 211 29.9
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 2.6e-08 65.1 831 21.4
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 4.4e-08 64.3 254 27.2
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 5.8e-08 63.9 298 27.5
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 5.8e-08 63.9 535 24.1
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.8e-08 63.9 231 29.4
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 7.5e-08 63.5 253 25.7
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 7.5e-08 63.5 697 22.5
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 9.9e-08 63.2 378 23.8
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 9.9e-08 63.2 212 24.5
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 1.3e-07 62.8 238 26.1
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 1.7e-07 62.4 825 22.1
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 1.7e-07 62.4 201 26.9
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.9e-07 60.8 202 24.8
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.4e-07 60.5 199 26.6
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 6.4e-07 60.5 200 26.0
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.4e-06 59.3 283 25.4
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.4e-06 59.3 359 24.0
Os08g0157800 Oryza sativa ssp. japonica HOM05D057671 ORTHO05D050048 1.4e-06 59.3 333 24.6
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.9e-06 58.9 216 26.9
BcaB04g17935 Brassica carinata HOM05D010823 ORTHO05D012736 1.9e-06 58.9 355 24.2
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 2.4e-06 58.5 192 29.7
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.4e-06 58.5 213 25.8
Thhalv10006985m.g Eutrema salsugineum HOM05D010823 ORTHO05D012736 2.4e-06 58.5 332 24.7
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 2.4e-06 58.5 834 23.5
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 4.1e-06 57.8 253 24.9
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 4.1e-06 57.8 253 24.9
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 7.1e-06 57.0 209 26.3
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 7.1e-06 57.0 196 26.5


User provided reference genes

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