Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 8.2e-184 647.1 376 100.0
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 3.6e-123 445.7 377 68.7
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 4.7e-123 445.3 379 72.8
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 1.1e-90 337.8 345 63.2
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 3.1e-90 336.3 376 60.9
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 9.0e-90 334.7 387 58.9
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 7.6e-89 331.6 382 63.4
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 1.3e-88 330.9 380 61.3
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 1.9e-87 327.0 382 57.3
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 1.0e-85 321.2 347 60.8
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.0e-85 321.2 347 60.8
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 2.3e-85 320.1 368 59.8
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 5.1e-85 318.9 362 60.5
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 6.7e-85 318.5 377 61.3
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 1.1e-82 311.2 362 58.6
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 2.4e-82 310.1 347 60.2
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 1.2e-81 307.8 363 56.2
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 4.5e-81 305.8 379 62.3
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 1.4e-79 300.8 369 58.3
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 2.5e-79 300.1 365 56.2
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 3.0e-77 293.1 363 54.5
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 9.7e-76 288.1 372 55.1
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 1.6e-75 287.3 369 55.0
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 1.7e-72 277.3 380 57.1
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.4e-71 274.2 347 50.7
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 3.2e-71 273.1 384 53.6
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 4.6e-70 269.2 347 49.9
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 1.4e-69 267.7 343 49.9
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 1.4e-69 267.7 365 52.3
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 1.8e-69 267.3 377 50.7
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 2.4e-66 256.9 363 56.5
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 1.5e-65 254.2 376 46.5
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.5e-65 254.2 359 50.4
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 3.8e-64 249.6 359 54.0
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 3.8e-64 249.6 364 52.7
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 6.5e-64 248.8 348 49.4
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 4.2e-63 246.1 367 50.1
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 1.1e-60 238.0 344 52.6
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 2.0e-60 237.3 356 52.0
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 2.0e-60 237.3 367 44.7
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 2.2e-59 233.8 336 52.1
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 4.8e-59 232.6 280 59.3
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 6.3e-59 232.3 374 42.2
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 1.4e-58 231.1 368 47.8
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 2.4e-58 230.3 278 54.3
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 7.0e-58 228.8 361 49.3
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 4.2e-55 219.5 408 49.5
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 4.2e-55 219.5 278 57.9
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 6.1e-54 215.7 310 53.5
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 5.2e-53 212.6 388 47.9
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 4.4e-52 209.5 296 53.0
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 7.5e-52 208.8 381 47.2
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 9.7e-52 208.4 278 54.3
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 9.7e-52 208.4 373 44.5
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 1.7e-51 207.6 285 54.4
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 1.8e-50 204.1 284 54.2
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 7.7e-49 198.7 331 49.2
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.2e-48 197.2 331 48.9
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 3.8e-48 196.4 334 48.8
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 5.0e-48 196.1 342 47.4
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.1e-47 194.9 327 50.2
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 4.2e-47 193.0 357 45.9
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 5.2e-45 186.0 363 44.1
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 4.5e-41 172.9 280 51.8
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 5.0e-40 169.5 350 47.4
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 1.9e-39 167.5 357 47.3
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 1.6e-38 164.5 348 44.3
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 4.7e-38 162.9 290 39.7
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 1.4e-37 161.4 269 41.3
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 6.8e-37 159.1 350 36.9
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 3.4e-36 156.8 385 42.1
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 9.8e-36 155.2 376 42.3
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 9.8e-36 155.2 369 39.6
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 4.9e-35 152.9 384 40.9
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 3.1e-34 150.2 362 39.2
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 4.1e-34 149.8 374 40.4
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 1.7e-32 144.4 362 37.6
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 8.6e-32 142.1 343 34.1
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 1.2e-30 138.3 371 39.6
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 6.8e-29 132.5 366 36.3
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 6.8e-29 132.5 366 36.3
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 2.2e-27 127.5 362 36.5
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 2.2e-27 127.5 362 36.5
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 1.1e-26 125.2 201 41.8
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 2.5e-23 114.0 292 34.6
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 3.3e-23 113.6 377 35.3
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 7.3e-23 112.5 366 34.7
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.2e-22 111.7 293 34.5
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 4.7e-22 109.8 178 43.8
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 1.4e-21 108.2 378 35.2
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 2.6e-20 104.0 88 62.5
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 9.8e-20 102.1 269 36.1
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 1.4e-18 98.2 338 33.4
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 2.7e-17 94.0 235 34.0
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.7e-16 91.3 151 56.3
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 2.9e-11 73.9 350 28.6
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 6.4e-11 72.8 349 24.9
BcaB07g31547 Brassica carinata HOM05D007467 ORTHO05D009441 2.4e-10 70.9 122 41.0
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 1.6e-09 68.2 91 40.7
MELO3C007386.2 Cucumis melo HOM05D002166 ORTHO05D002634 7.8e-09 65.9 235 26.0
Sed0003496 Sechium edule HOM05D002166 ORTHO05D002634 1.3e-08 65.1 278 25.9
ClCG01G022030 Citrullus lanatus HOM05D002166 ORTHO05D002634 3.9e-08 63.5 233 27.5
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 3.9e-08 63.5 248 30.6
CsaV3_6G049090 Cucumis sativus L. HOM05D002166 ORTHO05D002634 8.6e-08 62.4 231 26.8
SEGI_00451 Sequoiadendron giganteum HOM05D002319 ORTHO05D002374 8.6e-08 62.4 125 52.8
Dinv40752 Davidia involucrata HOM05D002166 ORTHO05D002634 1.1e-07 62.0 117 39.3
Migut.H01828 Erythranthe guttata HOM05D002166 ORTHO05D002634 1.1e-07 62.0 420 27.6
Sed0003279 Sechium edule HOM05D002166 ORTHO05D002634 1.5e-07 61.6 266 26.7
Cfa000231 Carpinus fangiana HOM05D002166 ORTHO05D002634 1.9e-07 61.2 372 24.2
SEGI_05627 Sequoiadendron giganteum HOM05D002166 ORTHO05D002634 2.5e-07 60.8 130 48.5
AagrBONN_evm.TU.Sc2ySwM_369.392 Anthoceros agrestis HOM05D002166 ORTHO05D002374 3.3e-07 60.5 125 44.0
Glyma.02G290700 Glycine max HOM05D002166 ORTHO05D002634 3.3e-07 60.5 163 36.8
Lalb_Chr19g0136341 Lupinus albus HOM05D002319 ORTHO05D002374 3.3e-07 60.5 166 31.3
Haze_06794 Corylus avellana HOM05D002166 ORTHO05D002634 4.3e-07 60.1 353 23.8
Glyma.14G024000 Glycine max HOM05D002166 ORTHO05D002634 5.6e-07 59.7 163 41.1
Pp3c18_10070 Physcomitrium patens HOM05D002166 ORTHO05D002634 5.6e-07 59.7 130 43.8
Hund20936 Selenicereus undatus HOM05D002319 ORTHO05D002374 7.3e-07 59.3 141 36.2
unitig_26.g9955 Utricularia gibba HOM05D002166 ORTHO05D002634 7.3e-07 59.3 125 48.0
CsaV3_7G021790 Cucumis sativus L. HOM05D002166 ORTHO05D002634 9.5e-07 58.9 98 41.8
MSTRG.15149 Avicennia marina HOM05D002166 ORTHO05D002634 1.2e-06 58.5 147 35.4
EL10Ac7g16328 Beta vulgaris HOM05D002319 ORTHO05D002374 1.2e-06 58.5 108 41.7
Ca_06318_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 1.2e-06 58.5 125 46.4
Ca_30807_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 1.2e-06 58.5 125 46.4
CANSAT11G1162 Cannabis sativa HOM05D002166 ORTHO05D002634 1.6e-06 58.2 125 46.4
AUR62020253 Chenopodium quinoa HOM05D002319 ORTHO05D002374 1.6e-06 58.2 133 35.3
Prupe.4G212500 Prunus persica HOM05D002166 ORTHO05D002634 1.6e-06 58.2 90 44.4
Ah.08g223170 Amaranthus hybridus HOM05D002319 ORTHO05D002374 2.1e-06 57.8 141 36.2
FAN25G0402 Fragaria x ananassa HOM05D002166 ORTHO05D002634 2.1e-06 57.8 105 40.0
arahy.Tifrunner.gnm1.ann1.2WUV3V Arachis hypogaea HOM05D002166 ORTHO05D002634 2.8e-06 57.4 129 45.7
arahy.Tifrunner.gnm1.ann1.MVDX5J Arachis hypogaea HOM05D002166 ORTHO05D002634 2.8e-06 57.4 129 45.7
CSS0020708 Camellia sinensis var. sinensis HOM05D002319 ORTHO05D002374 2.8e-06 57.4 108 37.0
CSS0043220 Camellia sinensis var. sinensis HOM05D002319 ORTHO05D002374 2.8e-06 57.4 108 37.0
ClCG09G010790 Citrullus lanatus HOM05D002166 ORTHO05D002634 2.8e-06 57.4 129 45.0
Potri.004G199500 Populus trichocarpa HOM05D002319 ORTHO05D002374 2.8e-06 57.4 130 35.4
TAR623G0514 Trochodendron aralioides HOM05D002319 ORTHO05D002374 2.8e-06 57.4 104 37.5
GSVIVG01012735001 Vitis vinifera HOM05D002166 ORTHO05D002634 2.8e-06 57.4 355 30.4
Glyma.11G181000 Glycine max HOM05D002319 ORTHO05D002374 3.6e-06 57.0 136 35.3
HanXRQChr08g0233861 Helianthus annuus HOM05D002166 ORTHO05D002634 3.6e-06 57.0 389 28.0
Oeu007581.1 Olea europaea HOM05D002166 ORTHO05D002634 3.6e-06 57.0 376 30.1
Prupe.6G137500 Prunus persica HOM05D002319 ORTHO05D002374 3.6e-06 57.0 146 40.4
SMO340G0154 Selaginella moellendorffii HOM05D002166 ORTHO05D002634 3.6e-06 57.0 133 45.9
Hund18779 Selenicereus undatus HOM05D002319 ORTHO05D002374 3.6e-06 57.0 112 36.6
Sc16g0006060 Simmondsia chinensis HOM05D002166 ORTHO05D002634 3.6e-06 57.0 153 35.9
Solyc12g005010.2 Solanum lycopersicum HOM05D002166 ORTHO05D002634 3.6e-06 57.0 129 34.9
CAN.G745.21 Capsicum annuum HOM05D002319 ORTHO05D002374 4.7e-06 56.6 125 37.6
Hma1.2p1_0673F.1_g201340 Hydrangea macrophylla HOM05D002166 ORTHO05D002634 4.7e-06 56.6 168 39.3
Pp3c9_16460 Physcomitrium patens HOM05D002319 ORTHO05D002374 4.7e-06 56.6 115 39.1
QL07p038003 Quercus lobata HOM05D002319 ORTHO05D002374 4.7e-06 56.6 123 47.2
QL93p1999_0036 Quercus lobata HOM05D002319 ORTHO05D002374 4.7e-06 56.6 123 47.2
RcHm_v2.0_Chr5g0047011 Rosa chinensis HOM05D002319 ORTHO05D002374 4.7e-06 56.6 143 34.3
vmacro11726 Vaccinium macrocarpon HOM05D002166 ORTHO05D002634 4.7e-06 56.6 110 35.5
HPP92_014125 Vanilla planifolia HOM05D002166 ORTHO05D002634 4.7e-06 56.6 129 48.8
Cpa.g.sc195.33 Carica papaya HOM05D002319 ORTHO05D002374 6.2e-06 56.2 149 33.6
CiPaw.12G129600 Carya illinoinensis HOM05D002166 ORTHO05D002634 6.2e-06 56.2 129 45.7
DCAR_010324 Daucus carota HOM05D002319 ORTHO05D002374 6.2e-06 56.2 129 34.1
FvH4_3g22650 Fragaria vesca HOM05D002166 ORTHO05D002634 6.2e-06 56.2 125 39.2
FAN16G1047 Fragaria x ananassa HOM05D002166 ORTHO05D002634 6.2e-06 56.2 125 39.2
Lj8A169T85 Lonicera japonica HOM05D002166 ORTHO05D002634 6.2e-06 56.2 94 40.4
PSO210G4122 Papaver somniferum HOM05D002166 ORTHO05D002634 6.2e-06 56.2 131 46.6
Phvul.006G042900 Phaseolus vulgaris HOM05D002166 ORTHO05D002634 6.2e-06 56.2 129 43.4
Psat2g011000 Pisum sativum HOM05D002166 ORTHO05D002634 6.2e-06 56.2 154 39.6
Solyc02g080520.4 Solanum lycopersicum HOM05D002166 ORTHO05D002634 6.2e-06 56.2 90 44.4
TAR626G0812 Trochodendron aralioides HOM05D002166 ORTHO05D002634 6.2e-06 56.2 109 36.7
TAR629G0586 Trochodendron aralioides HOM05D002166 ORTHO05D002634 6.2e-06 56.2 122 35.2
VMungo0540G1154 Vigna mungo HOM05D002166 ORTHO05D002634 6.2e-06 56.2 129 43.4
arahy.Tifrunner.gnm1.ann1.WD8FPH Arachis hypogaea HOM05D002319 ORTHO05D002374 8.1e-06 55.8 109 37.6
CAN.G569.10 Capsicum annuum HOM05D002166 ORTHO05D002634 8.1e-06 55.8 116 39.7
Cc09_g01740 Coffea canephora HOM05D002166 ORTHO05D002634 8.1e-06 55.8 429 21.4
MELO3C013168.2 Cucumis melo HOM05D002166 ORTHO05D002634 8.1e-06 55.8 129 44.2
DCAR_016704 Daucus carota HOM05D002166 ORTHO05D002634 8.1e-06 55.8 110 35.5
FAN21G3541 Fragaria x ananassa HOM05D002166 ORTHO05D002634 8.1e-06 55.8 105 39.0
Glyma.12G092200 Glycine max HOM05D002319 ORTHO05D002374 8.1e-06 55.8 133 34.6
LjContig00272g0027317 Lotus japonicus HOM05D002166 ORTHO05D002634 8.1e-06 55.8 129 46.5
Nitab4.5_0011129g0010 Nicotiana tabacum HOM05D002166 ORTHO05D002634 8.1e-06 55.8 129 45.0
Os04g0625000 Oryza sativa ssp. japonica HOM05D002166 ORTHO05D002634 8.1e-06 55.8 154 31.8
Potri.009G160900 Populus trichocarpa HOM05D002319 ORTHO05D002374 8.1e-06 55.8 130 36.2
Sabra11G0086400 Salix brachista HOM05D002166 ORTHO05D002634 8.1e-06 55.8 90 42.2
THA.LOC104817854 Tarenaya hassleriana HOM05D002166 ORTHO05D002634 8.1e-06 55.8 129 48.1
TWI31G1038 Tripterygium wilfordii HOM05D002319 ORTHO05D002374 8.1e-06 55.8 130 35.4


User provided reference genes

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