Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 5.4e-99 364.4 191 100.0
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 2.1e-90 335.9 191 93.2
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 8.1e-87 323.9 189 88.9
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 3.1e-86 322.0 189 88.9
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.9e-84 314.7 189 85.2
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 4.9e-84 314.7 189 86.2
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.1e-83 313.5 189 84.7
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 7.1e-83 310.8 189 85.2
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.9e-80 302.8 190 83.2
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 9.6e-80 300.4 189 82.0
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.1e-79 299.3 189 81.5
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.1e-79 297.4 189 81.5
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.1e-78 297.0 189 80.4
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 5.2e-78 294.7 189 79.9
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.5e-77 293.1 189 79.9
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.5e-77 293.1 189 78.8
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 3.4e-77 292.0 189 78.8
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 3.4e-77 292.0 178 83.7
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.4e-77 291.6 189 79.4
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.3e-76 290.0 186 81.7
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 2.2e-76 289.3 185 80.5
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 2.9e-76 288.9 190 80.0
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.9e-76 288.9 185 81.1
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 4.9e-76 288.1 189 79.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 8.4e-76 287.3 190 80.5
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 8.4e-76 287.3 189 79.9
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 8.4e-76 287.3 193 77.2
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 5.4e-75 284.6 173 83.8
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.6e-74 283.1 187 77.5
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 6.0e-74 281.2 189 77.8
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.3e-73 279.3 189 75.7
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.0e-73 278.9 190 76.8
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.9e-73 278.5 189 75.1
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.1e-72 276.9 189 78.3
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.9e-72 276.2 189 77.2
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 7.3e-72 274.2 190 77.9
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.3e-71 273.5 191 74.9
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.1e-71 272.7 197 74.6
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.1e-70 270.4 193 72.5
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.1e-70 270.4 191 74.9
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.1e-70 270.4 181 77.3
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.4e-70 270.0 189 73.0
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-69 266.9 191 73.3
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.5e-69 266.5 191 74.3
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.5e-69 266.5 197 70.6
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.5e-69 266.5 197 70.6
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.0e-69 266.2 189 74.6
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.6e-69 265.8 190 74.7
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 4.5e-69 265.0 190 74.7
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 4.5e-69 265.0 191 74.9
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.8e-69 264.6 191 72.8
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 5.8e-69 264.6 185 75.7
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 9.9e-69 263.8 191 72.8
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.3e-68 263.5 157 84.1
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.7e-68 263.1 191 72.3
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.2e-68 262.7 189 74.1
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 2.2e-68 262.7 189 75.1
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.9e-68 262.3 171 78.4
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 3.8e-68 261.9 207 68.1
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 3.8e-68 261.9 191 72.8
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.8e-68 261.9 200 68.5
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 4.9e-68 261.5 192 70.8
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 6.4e-68 261.2 201 68.7
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 6.4e-68 261.2 201 68.7
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.4e-68 261.2 201 68.7
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.1e-67 260.4 190 71.1
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.1e-67 260.4 173 78.0
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.1e-67 260.4 156 83.3
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.4e-67 260.0 200 68.5
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.4e-67 259.2 190 72.1
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.6e-66 256.5 195 70.3
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.6e-66 256.5 194 69.6
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 2.1e-66 256.1 192 71.4
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 2.1e-66 256.1 175 76.0
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.1e-66 256.1 191 72.8
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 4.6e-66 255.0 190 71.6
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 6.0e-66 254.6 190 71.6
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 6.0e-66 254.6 184 70.7
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 7.9e-66 254.2 157 79.6
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.0e-65 253.8 190 71.1
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.3e-65 253.4 193 69.9
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.8e-65 253.1 190 71.1
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 3.0e-65 252.3 193 72.0
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 5.1e-65 251.5 196 68.4
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 8.7e-65 250.8 189 69.3
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.1e-64 250.4 200 66.0
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 2.5e-64 249.2 192 68.8
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 2.5e-64 249.2 199 66.8
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 4.3e-64 248.4 189 71.4
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 5.6e-64 248.1 190 68.9
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 9.6e-64 247.3 189 70.9
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 9.6e-64 247.3 190 70.0
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.6e-63 246.5 197 65.0
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.1e-63 246.1 184 71.2
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 2.8e-63 245.7 190 68.4
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.8e-63 245.7 169 75.7
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 3.6e-63 245.4 190 68.4
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 4.8e-63 245.0 190 65.3
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 6.2e-63 244.6 190 67.9
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.4e-62 243.4 190 67.4
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.4e-62 243.4 189 67.7
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 5.3e-62 241.5 196 67.9
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.2e-61 240.4 170 72.4
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 2.0e-61 239.6 188 70.2
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 5.8e-61 238.0 151 80.1
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 5.8e-61 238.0 184 70.1
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.7e-60 236.5 208 63.9
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 3.8e-60 235.3 166 72.3
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 8.4e-60 234.2 189 64.6
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 4.2e-59 231.9 195 64.6
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 7.1e-59 231.1 190 65.8
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 9.3e-59 230.7 190 66.3
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.6e-58 229.9 156 72.4
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.1e-58 229.6 156 75.0
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.1e-58 229.6 168 73.2
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 2.1e-58 229.6 190 66.3
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 3.5e-58 228.8 167 71.9
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 7.9e-58 227.6 192 64.6
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.3e-57 226.9 168 72.0
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 3.0e-57 225.7 256 53.9
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 3.9e-57 225.3 149 77.9
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 2.5e-56 222.6 198 62.1
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.3e-55 220.3 168 70.2
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.1e-55 219.5 156 71.8
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.2e-53 213.8 191 62.3
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 3.8e-52 208.8 181 62.4
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 7.1e-51 204.5 191 60.2
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 2.1e-50 203.0 191 59.2
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 1.0e-49 200.7 164 67.1
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 6.7e-49 198.0 167 64.1
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 5.7e-48 194.9 131 77.1
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.4e-46 190.3 147 66.0
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 6.9e-46 188.0 234 52.1
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.2e-45 187.2 146 68.5
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 6.1e-42 174.9 132 67.4
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.1e-40 170.6 109 75.2
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 4.3e-40 168.7 104 79.8
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.6e-39 166.8 176 54.5
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.2e-39 166.4 184 53.8
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 3.1e-38 162.5 156 50.0
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.7e-37 157.9 130 63.1
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 2.2e-36 156.4 144 51.4
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-34 150.6 131 63.4
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.6e-34 149.1 131 61.8
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.9e-34 147.9 131 61.8
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.0e-33 147.5 155 51.0
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.4e-33 147.1 146 54.8
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.7e-33 144.8 131 62.6
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 8.8e-33 144.4 82 84.1
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 6.3e-31 138.3 118 61.9
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 8.2e-31 137.9 189 48.1
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.4e-30 136.3 104 60.6
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.1e-30 136.0 150 44.0
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 5.3e-30 135.2 146 43.8
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.5e-24 117.1 119 54.6
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.0e-17 94.4 87 60.9
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.5e-16 90.5 59 74.6
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.9e-12 76.3 178 38.2
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.5e-11 73.9 80 60.0
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 4.7e-10 68.9 104 46.2
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 1.4e-06 57.4 43 60.5
RcHm_v2.0_Chr2g0098501 Rosa chinensis HOM05D004525 ORTHO05D005295 7.0e-06 55.1 87 40.2
Cre12.g556450 Chlamydomonas reinhardtii HOM05D004525 ORTHO05D005295 9.1e-06 54.7 135 28.9


User provided reference genes

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