Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 9.2e-177 623.6 358 100.0
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.6e-141 506.5 364 78.6
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.7e-133 478.8 355 71.5
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 3.8e-130 468.8 365 75.3
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.7e-125 453.4 278 79.5
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.4e-124 450.3 280 78.9
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 9.1e-124 447.6 283 79.2
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 9.1e-124 447.6 280 80.7
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 1.2e-123 447.2 284 79.6
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.2e-123 447.2 365 69.9
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.2e-123 447.2 279 78.9
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.2e-123 447.2 279 77.8
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 2.0e-123 446.4 279 77.4
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 2.6e-123 446.0 281 77.6
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.9e-123 444.9 361 74.0
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.2e-122 443.0 286 78.3
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.8e-122 442.2 288 77.8
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.2e-121 439.1 279 77.8
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 2.7e-120 436.0 278 77.3
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 2.7e-120 436.0 281 78.6
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 3.6e-120 435.6 371 68.2
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.6e-120 435.6 278 77.7
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.0e-119 434.1 289 75.8
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.4e-119 433.7 280 77.5
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 2.3e-119 433.0 281 76.5
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 5.2e-119 431.8 287 74.9
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 5.2e-119 431.8 356 66.3
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 5.2e-119 431.8 274 75.9
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 8.8e-119 431.0 345 70.1
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.1e-118 430.6 281 76.5
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 2.0e-118 429.9 285 74.0
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 2.6e-118 429.5 284 76.1
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 3.3e-118 429.1 281 76.2
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 3.3e-118 429.1 279 76.7
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.3e-118 429.1 282 75.9
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 4.4e-118 428.7 371 64.7
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 5.7e-118 428.3 282 75.2
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 9.7e-118 427.6 279 74.9
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.3e-117 427.2 281 76.2
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.3e-117 427.2 281 76.5
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.7e-117 425.6 281 75.8
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 6.3e-117 424.9 281 76.2
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 8.2e-117 424.5 285 73.3
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.4e-116 422.9 281 75.4
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 3.1e-116 422.5 281 75.4
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 3.1e-116 422.5 281 75.4
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 4.1e-116 422.2 281 75.1
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 4.1e-116 422.2 281 75.4
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 4.1e-116 422.2 281 75.1
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 4.1e-116 422.2 281 75.1
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 9.1e-116 421.0 281 74.4
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.2e-115 420.6 362 70.2
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.6e-115 420.2 368 61.7
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.6e-115 420.2 281 75.4
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 2.0e-115 419.9 278 74.1
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 2.0e-115 419.9 278 73.7
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 2.0e-115 419.9 280 74.3
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.6e-115 419.5 278 74.1
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 3.5e-115 419.1 255 78.4
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 4.5e-115 418.7 368 63.6
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.0e-114 417.5 278 73.4
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 1.3e-114 417.2 282 75.2
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 1.7e-114 416.8 368 63.0
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 5.0e-114 415.2 279 72.8
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 5.0e-114 415.2 288 72.2
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.5e-113 413.7 283 72.1
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 3.2e-113 412.5 263 77.6
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 9.4e-113 411.0 288 71.2
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.6e-112 410.2 286 71.3
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.8e-111 406.8 278 73.0
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 7.5e-110 401.4 279 72.0
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 2.8e-109 399.4 279 71.0
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 2.4e-108 396.4 281 71.9
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 3.1e-108 396.0 276 69.6
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.0e-106 391.0 283 69.6
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.7e-106 390.2 274 68.2
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 8.8e-103 377.9 264 74.2
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.2e-99 367.5 292 69.2
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 2.7e-99 366.3 258 70.9
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 3.5e-99 365.9 254 67.3
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.0e-98 364.4 280 66.8
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 6.5e-98 361.7 259 67.6
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.5e-97 359.8 289 63.7
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.7e-96 355.5 254 67.7
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 3.4e-94 349.4 261 67.8
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 4.4e-94 349.0 259 68.0
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 4.9e-93 345.5 241 70.5
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 5.4e-92 342.0 243 70.4
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 9.2e-92 341.3 288 60.4
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.2e-91 340.9 254 66.9
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 7.8e-91 338.2 291 59.1
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.9e-90 336.3 247 68.4
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-89 334.0 254 63.0
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.3e-89 332.8 254 64.6
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 4.3e-89 332.4 254 62.6
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 9.5e-89 331.3 259 59.8
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 9.5e-89 331.3 248 67.3
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 1.2e-88 330.9 258 60.5
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.2e-88 330.9 254 63.4
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.2e-88 330.9 254 62.2
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 2.1e-88 330.1 257 62.3
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 2.8e-88 329.7 259 59.8
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 8.0e-88 328.2 254 60.6
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.0e-87 327.8 257 62.3
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.4e-87 327.4 249 65.9
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.8e-87 327.0 259 59.5
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 4.0e-87 325.9 254 61.8
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 8.9e-87 324.7 255 61.2
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-86 323.9 258 59.7
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.9e-85 318.9 254 59.4
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 6.4e-85 318.5 254 59.8
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-84 317.8 257 59.1
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-84 317.8 257 59.1
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 2.4e-84 316.6 252 61.9
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 5.4e-84 315.5 255 60.4
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 2.5e-81 306.6 254 59.8
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.3e-81 306.2 229 66.8
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 6.2e-80 302.0 257 56.4
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.2e-80 302.0 257 56.4
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.4e-79 300.8 231 61.9
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 5.2e-79 298.9 178 81.5
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-78 297.4 257 55.6
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-78 297.4 257 55.6
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-76 291.2 230 60.4
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.5e-73 280.0 259 55.2
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 4.3e-73 279.3 253 57.7
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 3.6e-72 276.2 252 54.4
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 6.2e-72 275.4 251 55.0
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 1.8e-71 273.9 197 70.6
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 3.1e-71 273.1 168 79.2
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.0e-66 258.1 234 56.0
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.0e-66 256.5 255 51.8
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.9e-66 256.1 229 54.1
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-66 255.8 255 51.8
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.8e-64 250.0 244 53.3
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.4e-63 247.7 163 72.4
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 7.6e-62 241.9 191 63.9
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 2.3e-58 230.3 399 39.1
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 3.0e-58 229.9 272 49.6
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.6e-58 228.8 180 61.1
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 4.3e-57 226.1 137 78.1
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 9.0e-55 218.4 224 53.1
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 4.2e-52 209.5 160 61.9
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 9.3e-52 208.4 250 47.2
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 7.8e-51 205.3 166 57.8
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.5e-49 200.3 125 76.8
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.4e-44 184.5 146 61.0
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 8.1e-40 168.7 224 46.9
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 4.0e-39 166.4 237 40.1
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.8e-37 159.8 199 47.2
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 9.3e-36 155.2 133 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.1e-31 141.7 215 40.0
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 2.7e-27 127.1 178 46.6
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 2.7e-27 127.1 243 36.2
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 6.7e-26 122.5 110 54.5
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.7e-25 119.4 151 65.6
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-24 117.5 122 51.6
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 2.8e-24 117.1 87 62.1
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.2e-19 101.7 185 33.0
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.0e-18 98.6 91 59.3
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 5.1e-18 96.3 66 71.2
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-17 95.1 65 72.3
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.5e-17 94.7 180 34.4
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 4.1e-15 86.7 69 63.8
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 6.9e-15 85.9 60 70.0
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-14 85.1 68 63.2
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.2e-13 80.9 63 61.9
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 6.5e-13 79.3 43 83.7
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 2.5e-12 77.4 262 29.4
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 2.5e-12 77.4 58 69.0
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 1.2e-11 75.1 82 53.7
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 8.8e-10 68.9 64 53.1


User provided reference genes

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