Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 1.4e-290 1002.3 506 100.0
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.1e-268 929.5 509 90.6
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 8.0e-267 923.3 507 90.7
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.1e-244 849.7 510 83.7
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.5e-244 848.6 511 84.7
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.6e-244 847.4 510 84.7
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.0e-242 843.2 511 84.1
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.2e-242 840.9 511 84.3
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 8.3e-240 833.6 511 83.2
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.3e-224 783.1 504 76.8
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 2.4e-223 778.9 507 76.5
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 4.6e-222 774.6 513 75.8
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 7.8e-222 773.9 505 74.7
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.1e-220 770.0 517 75.4
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 1.5e-217 759.6 504 75.4
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 3.4e-217 758.4 508 74.0
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 5.8e-217 757.7 513 73.9
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 3.8e-216 755.0 517 74.5
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 8.4e-216 753.8 509 75.0
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.9e-215 752.7 514 74.9
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 7.1e-215 750.7 507 73.4
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 1.2e-214 750.0 508 74.4
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.7e-214 748.8 502 72.5
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.5e-214 748.4 512 73.8
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 4.6e-214 748.0 516 73.8
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 6.0e-214 747.7 502 72.3
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 6.0e-214 747.7 522 73.0
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 7.8e-214 747.3 508 73.0
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 3.0e-213 745.3 525 71.4
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 5.1e-213 744.6 525 71.4
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 6.6e-213 744.2 511 72.4
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.5e-212 743.0 502 71.9
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 4.3e-212 741.5 505 73.5
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 2.1e-211 739.2 512 72.9
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 4.8e-211 738.0 507 72.2
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 1.1e-210 736.9 505 72.1
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 2.4e-210 735.7 516 71.1
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 2.0e-209 732.6 528 70.3
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 4.9e-208 728.0 563 66.3
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 6.4e-208 727.6 506 71.9
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 7.1e-207 724.2 506 71.7
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 9.3e-207 723.8 511 69.7
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.2e-206 723.4 513 70.8
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.5e-206 721.8 504 70.2
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 3.5e-206 721.8 485 74.4
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.3e-205 719.9 504 68.5
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 8.7e-205 717.2 503 70.2
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 7.3e-204 714.1 507 69.8
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 1.6e-203 713.0 495 71.5
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 5.8e-201 704.5 506 68.6
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 2.2e-200 702.6 598 62.4
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 2.1e-198 696.0 504 69.4
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 6.7e-197 691.0 502 68.3
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 9.6e-196 687.2 519 65.1
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 9.6e-196 687.2 520 67.7
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 8.1e-195 684.1 502 68.9
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 1.4e-191 673.3 512 68.6
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 7.1e-191 671.0 520 64.4
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 1.6e-190 669.8 508 65.6
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 3.5e-190 668.7 504 66.9
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.5e-188 663.3 509 65.8
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 7.6e-185 651.0 517 63.4
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 7.6e-185 651.0 532 63.7
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 5.0e-184 648.3 497 66.6
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.9e-183 646.4 518 64.1
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 7.9e-182 641.0 527 62.6
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 1.3e-179 633.6 512 63.9
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 3.7e-179 632.1 515 63.7
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 6.9e-178 627.9 538 60.0
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 7.7e-177 624.4 530 62.1
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.7e-176 623.2 517 59.6
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 8.5e-176 620.9 497 64.0
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 5.5e-175 618.2 465 67.7
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 9.4e-175 617.5 524 61.3
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 1.6e-174 616.7 458 68.3
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.4e-173 613.6 564 58.3
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 3.9e-173 612.1 394 77.2
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 2.2e-171 606.3 533 57.6
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.8e-170 603.2 555 58.0
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 2.6e-169 599.4 523 59.3
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 2.6e-169 599.4 523 59.3
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 2.6e-169 599.4 523 59.3
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 4.5e-169 598.6 525 59.2
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 2.9e-168 595.9 523 59.1
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 2.9e-168 595.9 523 59.1
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 6.5e-168 594.7 501 60.7
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.0e-157 560.8 405 69.1
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.2e-155 553.1 364 76.1
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.8e-154 550.1 500 57.4
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 7.2e-143 511.5 349 73.4
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 1.5e-140 503.8 278 91.4
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 2.3e-125 453.4 379 62.0
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 2.7e-121 439.9 500 51.6
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 9.5e-119 431.4 470 54.9
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.1e-117 427.9 530 46.6
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 1.6e-110 404.1 531 45.2
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 2.2e-107 393.7 513 43.1
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 7.1e-106 388.7 490 48.6
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 8.7e-96 355.1 253 69.6
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 4.3e-95 352.8 233 75.1
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 2.2e-91 340.5 253 68.0
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.1e-87 328.2 261 61.3
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 6.2e-86 322.4 554 35.0
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 2.5e-79 300.4 202 69.8
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 9.6e-79 298.5 214 70.1
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.2e-73 281.6 457 39.8
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.7e-73 280.4 219 68.9
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.3e-64 251.5 259 44.0
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 4.3e-63 246.5 237 53.6
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.9e-59 233.8 221 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 6.5e-59 232.6 247 48.6
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.1e-55 221.9 247 53.8
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 5.9e-52 209.5 488 28.3
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 6.5e-51 206.1 179 59.2
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 3.5e-44 183.7 147 63.9
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 8.5e-43 179.1 258 45.7
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.8e-40 171.4 186 48.9
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 1.2e-39 168.7 481 29.7
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 1.6e-33 148.3 522 26.4
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 4.8e-30 136.7 105 61.9
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 7.7e-28 129.4 95 71.6
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 6.5e-27 126.3 109 57.8
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 4.2e-26 123.6 82 70.7
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 6.3e-22 109.8 169 38.5
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.1e-21 107.1 121 49.6
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 1.0e-19 102.4 126 49.2
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 1.7e-19 101.7 190 40.0
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 2.8e-17 94.4 53 75.5
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 5.4e-13 80.1 84 50.0
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 4.7e-09 67.0 88 39.8
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.0e-07 61.6 70 50.0


User provided reference genes

Program Settings