Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.1e-107 393.3 202 100.0
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.5e-94 349.7 204 89.2
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 8.8e-84 313.9 204 82.8
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 4.4e-83 311.6 204 83.3
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.7e-80 302.4 208 77.9
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.7e-80 302.4 208 77.9
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.7e-80 302.4 208 77.9
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.5e-80 302.0 208 78.8
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-79 300.1 208 77.9
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.9e-78 296.2 208 76.9
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 2.0e-75 286.2 217 70.0
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 2.4e-73 279.3 206 70.4
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 7.0e-73 277.7 206 70.4
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.2e-72 276.9 213 67.6
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.2e-72 276.9 213 67.6
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.5e-72 275.0 213 67.1
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.3e-71 272.7 194 72.2
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.5e-70 270.0 188 72.3
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.6e-69 266.5 201 70.6
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.6e-69 266.5 213 65.3
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.8e-69 265.8 210 67.1
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 6.1e-69 264.6 165 80.0
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.4e-68 263.5 214 66.8
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 5.2e-68 261.5 216 67.1
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 6.8e-68 261.2 214 66.4
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 3.4e-67 258.8 214 65.0
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 9.8e-67 257.3 212 62.3
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.8e-67 257.3 201 67.2
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.7e-66 256.5 199 67.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.7e-66 256.5 212 66.0
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 8.3e-66 254.2 213 66.2
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.1e-65 253.8 204 68.1
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-65 253.8 205 68.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.9e-65 253.1 206 66.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.9e-65 253.1 204 67.2
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.9e-65 253.1 213 63.4
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.2e-65 252.3 200 69.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 3.2e-65 252.3 215 63.7
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.1e-65 251.9 203 65.5
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 4.1e-65 251.9 265 54.7
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 4.1e-65 251.9 204 66.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 4.1e-65 251.9 204 66.7
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 5.4e-65 251.5 203 65.5
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 5.4e-65 251.5 197 67.0
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.0e-65 251.1 183 69.9
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.0e-65 251.1 183 69.9
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.2e-65 250.8 202 67.8
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.2e-64 250.4 211 63.5
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.6e-64 250.0 214 63.1
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.0e-64 249.6 204 66.2
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.7e-64 249.2 203 65.0
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.5e-64 248.8 200 67.5
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 4.6e-64 248.4 157 77.7
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.0e-64 248.1 183 69.4
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 7.8e-64 247.7 216 64.8
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.3e-63 246.9 211 63.5
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.7e-63 246.5 206 67.5
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.7e-63 246.5 188 69.7
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.7e-63 246.5 216 63.9
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 3.0e-63 245.7 202 66.3
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.9e-63 245.4 215 60.5
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 5.0e-63 245.0 206 67.0
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 5.0e-63 245.0 200 67.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 8.6e-63 244.2 206 62.6
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 8.6e-63 244.2 157 77.1
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 8.6e-63 244.2 183 71.6
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.1e-62 243.8 211 64.5
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.1e-62 243.8 204 64.7
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.5e-62 243.4 156 76.9
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.5e-62 242.7 206 64.6
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 3.3e-62 242.3 212 64.6
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.3e-62 241.9 201 65.2
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 4.3e-62 241.9 209 61.2
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 5.6e-62 241.5 204 64.2
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 5.6e-62 241.5 202 64.9
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 5.6e-62 241.5 202 64.9
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 5.6e-62 241.5 202 64.9
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 7.3e-62 241.1 201 65.2
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 9.5e-62 240.7 213 62.4
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 9.5e-62 240.7 208 62.0
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-61 240.4 214 62.6
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.2e-61 240.4 198 63.1
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.6e-61 240.0 221 60.6
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-61 240.0 215 62.3
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.6e-61 240.0 215 62.3
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.6e-61 240.0 190 66.8
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.8e-61 239.2 203 62.6
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.6e-61 238.8 208 61.1
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 4.7e-61 238.4 214 61.7
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 4.7e-61 238.4 202 62.9
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 6.2e-61 238.0 157 76.4
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.1e-60 237.3 207 61.4
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.1e-60 237.3 203 66.0
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.4e-60 236.9 202 62.9
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.5e-59 231.1 203 62.1
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.3e-58 230.3 206 63.1
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.7e-58 229.9 205 61.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.2e-58 229.6 207 60.4
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.7e-58 228.8 166 71.1
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.4e-57 226.1 204 60.8
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 7.1e-57 224.6 155 72.9
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.7e-55 219.9 190 62.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.7e-55 219.9 206 61.2
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.7e-55 219.9 205 58.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 3.0e-55 219.2 212 59.0
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 3.9e-55 218.8 188 63.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.5e-54 216.9 199 58.8
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.9e-54 216.5 165 67.3
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 4.3e-54 215.3 197 58.4
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 7.3e-54 214.5 123 83.7
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.2e-53 213.8 156 67.9
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 4.7e-53 211.8 208 52.9
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 4.4e-51 205.3 167 67.7
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 8.3e-50 201.1 125 76.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.9e-49 199.9 178 60.7
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 3.2e-49 199.1 308 43.8
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.3e-47 193.7 180 57.8
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 6.6e-47 191.4 125 71.2
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 8.6e-47 191.0 155 63.2
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.1e-46 190.7 157 63.1
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 5.6e-46 188.3 102 91.2
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.1e-44 182.6 207 51.2
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.0e-44 182.2 207 51.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 8.9e-44 181.0 120 73.3
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 9.9e-43 177.6 120 70.8
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.3e-42 177.2 214 51.9
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.2e-40 170.6 163 57.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 9.0e-36 154.5 93 76.3
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 5.8e-35 151.8 137 55.5
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.9e-34 149.4 113 60.2
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.9e-34 149.4 163 49.1
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 8.4e-34 147.9 106 63.2
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.9e-33 146.7 217 46.1
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 5.4e-33 145.2 81 86.4
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 5.4e-33 145.2 106 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 4.6e-32 142.1 129 54.3
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.8e-28 130.2 94 63.8
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.4e-25 119.8 67 83.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.4e-25 119.8 67 83.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.2e-25 119.4 80 72.5
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.9e-22 110.2 135 50.4
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.1e-21 106.7 91 61.5
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.9e-17 93.6 69 66.7
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 9.6e-14 81.3 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.4e-11 72.8 167 32.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 5.5e-09 65.5 99 44.4
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 8.7e-07 58.2 38 73.7


User provided reference genes

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