Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.1e-133 479.9 249 100.0
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.3e-97 360.1 253 73.5
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 3.0e-97 359.0 253 73.5
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.9e-97 358.6 253 73.5
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.7e-92 342.0 252 71.4
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.9e-92 341.7 253 70.8
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.1e-91 338.6 253 70.4
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 1.1e-86 323.9 253 67.2
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 1.4e-83 313.5 249 67.1
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.0e-81 307.4 248 66.1
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.0e-81 307.4 249 63.9
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 1.3e-81 307.0 245 63.3
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 1.3e-81 307.0 245 63.3
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 1.3e-81 307.0 249 65.9
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 6.6e-81 304.7 249 65.1
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 2.5e-80 302.8 249 62.2
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 4.0e-78 295.4 252 60.7
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 4.0e-78 295.4 249 61.4
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 1.2e-77 293.9 252 61.1
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.1e-75 287.3 253 60.9
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 1.9e-75 286.6 251 61.8
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 2.4e-75 286.2 242 63.6
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 7.1e-75 284.6 245 61.6
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 1.7e-73 280.0 249 57.8
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 3.9e-73 278.9 243 58.4
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 3.9e-73 278.9 247 60.3
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 8.7e-73 277.7 248 59.7
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 2.5e-72 276.2 250 59.6
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 4.3e-72 275.4 248 58.9
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 4.3e-72 275.4 251 58.2
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 1.2e-71 273.9 250 57.2
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.2e-71 273.9 247 59.9
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 1.6e-71 273.5 246 56.9
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 4.7e-71 271.9 249 60.6
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 4.7e-71 271.9 246 57.3
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.1e-70 270.8 248 58.9
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.4e-70 270.4 247 60.3
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.8e-70 270.0 248 59.7
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 2.4e-70 269.6 238 61.8
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 3.1e-70 269.2 246 56.1
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 5.2e-70 268.5 194 70.6
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.2e-70 268.5 250 60.8
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 1.2e-69 267.3 190 68.4
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 3.4e-69 265.8 246 57.3
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 4.4e-69 265.4 245 55.1
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 5.8e-69 265.0 243 57.6
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 7.6e-69 264.6 249 58.2
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 7.6e-69 264.6 250 59.2
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 2.2e-68 263.1 253 56.1
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 3.8e-68 262.3 244 57.0
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 4.2e-67 258.8 250 57.2
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 1.2e-66 257.3 247 57.1
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 1.2e-66 257.3 243 60.5
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 2.7e-66 256.1 246 56.1
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 3.5e-66 255.8 253 56.5
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 3.5e-66 255.8 254 58.3
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 6.0e-66 255.0 245 54.7
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 7.8e-66 254.6 247 57.5
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 1.3e-65 253.8 248 56.0
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 1.7e-65 253.4 254 58.7
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 2.3e-65 253.1 244 54.5
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 5.1e-65 251.9 244 54.1
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 6.6e-65 251.5 248 55.6
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 1.5e-64 250.4 245 55.1
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 4.3e-64 248.8 253 56.9
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 5.6e-64 248.4 240 58.3
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.3e-63 247.3 250 59.6
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 2.8e-63 246.1 255 57.6
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 1.1e-62 244.2 243 54.3
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 1.1e-62 244.2 256 55.5
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 3.4e-61 239.2 199 63.3
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 4.5e-61 238.8 248 56.0
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 7.6e-61 238.0 241 59.3
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 9.9e-61 237.7 218 57.8
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 2.2e-60 236.5 235 57.4
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 6.4e-60 235.0 246 54.5
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.4e-59 233.8 242 55.8
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 5.4e-59 231.9 240 55.0
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 9.3e-59 231.1 255 54.1
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 6.7e-57 224.9 205 58.5
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 1.9e-56 223.4 189 62.4
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 3.7e-55 219.2 268 48.5
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 1.4e-54 217.2 195 63.1
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 4.0e-54 215.7 249 51.4
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 5.3e-54 215.3 247 51.8
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.0e-53 213.4 233 51.5
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 7.6e-53 211.5 228 52.2
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 1.7e-52 210.3 248 48.8
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 2.9e-52 209.5 268 47.8
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 3.2e-51 206.1 135 74.1
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 6.0e-50 201.8 246 52.0
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 8.7e-49 198.0 205 54.6
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 1.9e-48 196.8 204 52.0
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 3.4e-45 186.0 251 45.8
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 2.2e-39 166.8 192 51.6
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 8.2e-39 164.9 197 46.2
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 4.1e-38 162.5 235 43.4
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 2.2e-36 156.8 206 45.1
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 3.9e-33 146.0 194 46.9
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.9e-32 143.7 251 41.4
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 2.8e-31 139.8 153 53.6
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.1e-30 137.9 171 48.0
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 1.1e-30 137.9 171 48.0
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.1e-30 137.9 171 48.0
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 3.0e-25 119.8 167 50.3
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 8.8e-25 118.2 143 47.6
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 6.3e-23 112.1 149 47.7
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 1.8e-22 110.5 150 52.7
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 7.0e-22 108.6 148 50.0
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 9.1e-22 108.2 219 37.4
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 9.1e-22 108.2 219 37.4
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 5.9e-21 105.5 151 42.4
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 5.9e-21 105.5 163 38.7
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 7.7e-21 105.1 145 44.1
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 5.0e-20 102.4 146 45.2
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.4e-19 100.9 150 45.3
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.4e-19 100.9 146 43.2
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 3.2e-19 99.8 109 56.0
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 2.1e-18 97.1 153 45.8
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 6.1e-18 95.5 151 48.3
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 6.7e-17 92.0 134 47.8
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 3.3e-16 89.7 138 44.9
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 9.1e-14 81.6 127 43.3
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 9.7e-08 61.6 64 48.4
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 2.2e-07 60.5 59 54.2


User provided reference genes

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