Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.3e-38 162.5 82 100.0
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 1.8e-27 125.6 82 81.7
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.1e-27 124.8 82 82.9
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.5e-26 122.5 82 81.7
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 5.8e-26 120.6 82 80.5
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.8e-26 120.6 82 80.5
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.9e-24 115.5 85 71.8
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 2.4e-24 115.2 77 79.2
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.2e-24 114.8 79 79.7
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 3.2e-24 114.8 82 72.0
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.6e-23 112.5 82 73.2
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.6e-23 112.5 82 73.2
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.3e-22 109.4 82 72.0
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.8e-22 109.0 82 69.5
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.8e-22 109.0 82 72.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.8e-22 109.0 82 72.0
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 2.3e-22 108.6 83 73.5
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.0e-22 108.2 82 72.0
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.0e-22 108.2 76 78.9
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 3.9e-22 107.8 83 72.3
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.9e-22 107.8 79 72.2
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 6.7e-22 107.1 82 70.7
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 6.7e-22 107.1 82 72.0
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 6.7e-22 107.1 79 74.7
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 6.7e-22 107.1 84 70.2
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 8.7e-22 106.7 82 72.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.1e-21 106.3 85 64.7
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.9e-21 105.5 82 70.7
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 2.5e-21 105.1 82 69.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.3e-21 104.4 82 68.3
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 4.3e-21 104.4 83 71.1
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 7.4e-21 103.6 82 67.1
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 7.4e-21 103.6 81 67.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.3e-20 102.8 77 70.1
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.8e-20 100.9 83 68.7
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 6.2e-20 100.5 77 71.4
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 8.1e-20 100.1 82 65.9
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-19 99.8 77 70.1
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-19 99.8 77 70.1
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.1e-19 99.8 80 67.5
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.8e-19 99.0 82 67.1
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.8e-19 99.0 77 70.1
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.8e-19 99.0 87 64.4
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 3.1e-19 98.2 76 64.5
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 3.1e-19 98.2 86 62.8
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 9.0e-19 96.7 82 64.6
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.2e-18 96.3 82 62.2
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.5e-18 95.9 81 69.1
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.5e-18 95.9 79 65.8
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 2.0e-18 95.5 84 65.5
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.0e-18 95.5 85 63.5
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 4.5e-18 94.4 77 67.5
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.8e-18 94.0 85 63.5
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 5.8e-18 94.0 85 63.5
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 7.6e-18 93.6 87 62.1
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.3e-17 92.8 82 63.4
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.3e-17 92.8 78 66.7
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 1.7e-17 92.4 80 62.5
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.2e-17 92.0 73 68.5
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 2.2e-17 92.0 79 62.0
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.8e-17 91.3 82 65.9
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.8e-17 91.3 79 64.6
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.8e-17 91.3 91 58.2
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 3.8e-17 91.3 79 63.3
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.9e-17 90.9 82 61.0
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.5e-17 90.5 85 60.0
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 6.5e-17 90.5 73 67.1
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 6.5e-17 90.5 82 59.8
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 8.4e-17 90.1 91 58.2
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 8.4e-17 90.1 89 57.3
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.1e-16 89.7 91 58.2
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.1e-16 89.7 78 64.1
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.1e-16 89.7 78 64.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.5e-16 88.6 78 65.4
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 7.1e-16 87.0 83 59.0
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 7.1e-16 87.0 82 56.1
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.1e-16 87.0 86 60.5
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 7.1e-16 87.0 77 62.3
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-15 86.3 82 58.5
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-15 86.3 78 61.5
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.2e-15 86.3 86 59.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.2e-15 86.3 75 60.0
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.6e-15 85.9 88 52.3
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.1e-15 85.5 87 55.2
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.1e-15 85.5 82 58.5
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 2.1e-15 85.5 82 57.3
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.7e-15 85.1 83 59.0
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 3.5e-15 84.7 80 60.0
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.6e-15 84.3 82 57.3
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 4.6e-15 84.3 82 59.8
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.6e-15 84.3 86 59.3
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 6.0e-15 84.0 86 58.1
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 7.9e-15 83.6 79 62.0
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.0e-14 83.2 82 56.1
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.3e-14 82.8 82 61.0
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.8e-14 82.4 83 55.4
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 3.0e-14 81.6 95 53.7
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 5.1e-14 80.9 83 56.6
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 6.7e-14 80.5 82 54.9
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.1e-13 79.7 82 57.3
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-13 79.7 79 55.7
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.5e-13 79.3 78 57.7
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.5e-13 79.3 81 56.8
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.5e-13 79.3 83 59.0
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.9e-13 79.0 82 54.9
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 2.5e-13 78.6 79 54.4
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.5e-13 78.6 77 55.8
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 2.5e-13 78.6 85 57.6
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 3.3e-13 78.2 84 56.0
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 3.3e-13 78.2 80 55.0
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 4.3e-13 77.8 83 54.2
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 7.4e-13 77.0 62 67.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 7.4e-13 77.0 91 49.5
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 7.4e-13 77.0 83 54.2
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.4e-13 77.0 83 54.2
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 9.6e-13 76.6 79 51.9
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 9.6e-13 76.6 75 56.0
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.6e-12 75.9 80 58.8
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 2.1e-12 75.5 77 54.5
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.1e-12 75.5 77 55.8
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.1e-12 75.5 93 52.7
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 2.8e-12 75.1 83 55.4
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.7e-12 74.7 80 53.8
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.7e-12 74.7 75 61.3
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 4.8e-12 74.3 77 50.6
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 6.2e-12 73.9 86 55.8
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 6.2e-12 73.9 74 59.5
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 8.2e-12 73.6 86 51.2
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 8.2e-12 73.6 80 53.8
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 8.2e-12 73.6 82 52.4
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 8.2e-12 73.6 78 57.7
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.1e-11 73.2 82 53.7
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.4e-11 72.8 78 57.7
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.4e-11 72.8 84 46.4
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.4e-11 72.8 88 52.3
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.8e-11 72.4 78 53.8
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.4e-11 72.0 79 55.7
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.4e-11 72.0 85 52.9
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.1e-11 71.6 74 54.1
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 4.0e-11 71.2 72 56.9
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 4.0e-11 71.2 77 57.1
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.0e-11 71.2 87 50.6
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.0e-11 71.2 78 55.1
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 5.3e-11 70.9 72 56.9
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 9.0e-11 70.1 84 56.0
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 9.0e-11 70.1 89 50.6
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 9.0e-11 70.1 98 50.0
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-10 69.7 82 53.7
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-10 69.7 82 52.4
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.4e-10 68.2 82 52.4
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 7.6e-10 67.0 77 54.5
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 7.6e-10 67.0 77 51.9
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-09 66.2 78 50.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.2e-09 65.5 77 54.5
FAN04G1321 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.8e-09 64.7 52 75.0
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 5.0e-09 64.3 82 43.9
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 8.4e-09 63.5 59 59.3
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.4e-08 62.8 77 53.2
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.4e-08 62.8 95 48.4
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 9.3e-08 60.1 78 48.7
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 1.2e-07 59.7 57 52.6
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.2e-07 59.7 84 41.7
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.6e-07 59.3 84 44.0
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.0e-06 56.6 78 47.4
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 1.3e-06 56.2 82 42.7
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 6.7e-06 53.9 79 45.6


User provided reference genes

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