Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G119200 Prunus persica HOM05D000354 ORTHO05D000181 1.8e-66 255.8 124 100.0
Prupe.5G119400 Prunus persica HOM05D000354 ORTHO05D000181 6.5e-61 237.3 121 93.4
MD06G1106500 Malus domestica HOM05D009669 ORTHO05D000181 1.9e-36 156.0 121 58.7
Prupe.5G118600 Prunus persica HOM05D000275 ORTHO05D000181 6.5e-21 104.4 112 46.4
FvH4_5g04531 Fragaria vesca HOM05D000354 ORTHO05D000181 9.8e-17 90.5 124 41.9
FAN04G3100 Fragaria x ananassa HOM05D000354 ORTHO05D000181 9.8e-17 90.5 123 42.3
FAN18G3208 Fragaria x ananassa HOM05D000354 ORTHO05D000717 9.8e-17 90.5 123 42.3
TAR636G0501 Trochodendron aralioides HOM05D000275 ORTHO05D000181 1.7e-16 89.7 111 40.5
RcHm_v2.0_Chr7g0194911 Rosa chinensis HOM05D000354 ORTHO05D000181 2.2e-16 89.4 126 41.3
FAN08G2372 Fragaria x ananassa HOM05D000354 ORTHO05D000717 6.3e-16 87.8 122 41.8
CiPaw.02G040200 Carya illinoinensis HOM05D000275 ORTHO05D000181 4.1e-15 85.1 92 44.6
Actinidia22157 Actinidia chinensis HOM05D000275 ORTHO05D000181 9.1e-15 84.0 114 36.0
Haze_25363 Corylus avellana HOM05D033107 ORTHO05D000181 1.6e-14 83.2 122 36.9
PGR031G1668 Punica granatum HOM05D000275 ORTHO05D000181 2.0e-14 82.8 122 35.2
TAR374G1222 Trochodendron aralioides HOM05D000275 ORTHO05D000181 3.5e-14 82.0 110 37.3
MD01G1079700 Malus domestica HOM05D000275 ORTHO05D000181 4.5e-14 81.6 95 38.9
CANSAT56G2214 Cannabis sativa HOM05D000275 ORTHO05D000181 1.0e-13 80.5 115 32.2
CANSAT56G1709 Cannabis sativa HOM05D000275 ORTHO05D000181 2.9e-13 79.0 120 32.5
Manes.01G246800 Manihot esculenta HOM05D000275 ORTHO05D000181 3.8e-13 78.6 111 34.2
MD06G1106400 Malus domestica HOM05D000275 ORTHO05D000181 6.5e-13 77.8 74 50.0
Eucgr.E00056 Eucalyptus grandis HOM05D009669 ORTHO05D000181 1.1e-12 77.0 96 43.8
Prupe.2G187100 Prunus persica HOM05D000275 ORTHO05D000181 1.1e-12 77.0 119 34.5
Aqoxy7G00106 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 1.9e-12 76.3 110 32.7
Cfa011911 Carpinus fangiana HOM05D000275 ORTHO05D000181 1.9e-12 76.3 115 32.2
Haze_09187 Corylus avellana HOM05D000275 ORTHO05D000181 3.2e-12 75.5 88 36.4
Ah.05g179640 Amaranthus hybridus HOM05D000275 ORTHO05D000181 4.2e-12 75.1 113 37.2
CAN.G986.13 Capsicum annuum HOM05D000275 ORTHO05D000181 4.2e-12 75.1 99 37.4
TWI59G0931 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 4.2e-12 75.1 110 30.9
CsaV3_3G008100 Cucumis sativus L. HOM05D000275 ORTHO05D000181 5.5e-12 74.7 114 36.8
AUR62019837 Chenopodium quinoa HOM05D002290 ORTHO05D002532 7.2e-12 74.3 92 39.1
Potri.014G098000 Populus trichocarpa HOM05D000275 ORTHO05D000181 7.2e-12 74.3 112 34.8
PGR042G1181 Punica granatum HOM05D000275 ORTHO05D000181 9.4e-12 73.9 116 32.8
Ah.05g179650 Amaranthus hybridus HOM05D000275 ORTHO05D000181 1.2e-11 73.6 96 35.4
Ah.12g052540 Amaranthus hybridus HOM05D002290 ORTHO05D002532 1.2e-11 73.6 108 36.1
Phvul.010G069500 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 1.2e-11 73.6 123 31.7
Peaxi162Scf00786g00431 Petunia axillaris HOM05D000275 ORTHO05D000181 1.6e-11 73.2 102 37.3
Ciclev10024405m.g Citrus clementina HOM05D000275 ORTHO05D000181 2.7e-11 72.4 94 33.0
FvH4_7g16320 Fragaria vesca HOM05D000275 ORTHO05D000181 3.6e-11 72.0 117 31.6
FAN06G2922 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.6e-11 72.0 117 31.6
FAN06G3596 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.6e-11 72.0 117 31.6
AUR62023470 Chenopodium quinoa HOM05D000275 ORTHO05D000181 4.7e-11 71.6 113 34.5
Migut.J00046 Erythranthe guttata HOM05D000275 ORTHO05D000181 4.7e-11 71.6 117 34.2
Lalb_Chr15g0076251 Lupinus albus HOM05D000275 ORTHO05D000181 4.7e-11 71.6 120 32.5
VMungo0540G1752 Vigna mungo HOM05D000275 ORTHO05D000181 4.7e-11 71.6 116 31.9
ClCG05G000860 Citrullus lanatus HOM05D000275 ORTHO05D000181 6.1e-11 71.2 117 33.3
Duzib268G0438 Durio zibethinus HOM05D000275 ORTHO05D000181 6.1e-11 71.2 123 30.9
Eucgr.A00745 Eucalyptus grandis HOM05D000275 ORTHO05D000181 8.0e-11 70.9 118 33.1
MD07G1148600 Malus domestica HOM05D000275 ORTHO05D000181 8.0e-11 70.9 95 36.8
Ciclev10022824m.g Citrus clementina HOM05D000275 ORTHO05D000181 1.4e-10 70.1 100 35.0
Atru.chr5.658 Acer truncatum HOM05D000275 ORTHO05D000181 1.8e-10 69.7 122 30.3
Ciclev10022783m.g Citrus clementina HOM05D009669 ORTHO05D000181 1.8e-10 69.7 104 32.7
Gohir.A09G213654 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.8e-10 69.7 121 31.4
Nitab4.5_0004999g0110 Nicotiana tabacum HOM05D009669 ORTHO05D000181 1.8e-10 69.7 105 33.3
EL10Ac1g00279 Beta vulgaris HOM05D000275 ORTHO05D000181 2.3e-10 69.3 113 29.2
Cpa.g.sc96.4 Carica papaya HOM05D002290 ORTHO05D002532 2.3e-10 69.3 111 32.4
Hma1.2p1_0295F.1_g116640 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 2.3e-10 69.3 114 36.8
Phvul.006G112211 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 2.3e-10 69.3 113 30.1
Dinv32580 Davidia involucrata HOM05D009669 ORTHO05D000181 3.0e-10 68.9 114 34.2
Glyma.03G257200 Glycine max HOM05D000275 ORTHO05D000181 3.0e-10 68.9 117 29.9
FAN01G1361 Fragaria x ananassa HOM05D009669 ORTHO05D000181 4.0e-10 68.6 117 32.5
Lalb_Chr21g0316631 Lupinus albus HOM05D000275 ORTHO05D000181 4.0e-10 68.6 117 29.1
Nitab4.5_0002140g0020 Nicotiana tabacum HOM05D000275 ORTHO05D000181 4.0e-10 68.6 116 34.5
RcHm_v2.0_Chr1g0359331 Rosa chinensis HOM05D000275 ORTHO05D000181 4.0e-10 68.6 117 32.5
TWI53G1340 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 4.0e-10 68.6 125 33.6
MSTRG.18946 Avicennia marina HOM05D000275 ORTHO05D000181 6.8e-10 67.8 121 30.6
Carub.0004s2051 Capsella rubella HOM05D000275 ORTHO05D000181 6.8e-10 67.8 124 29.8
FAN03G3319 Fragaria x ananassa HOM05D000275 ORTHO05D000181 6.8e-10 67.8 115 31.3
Nitab4.5_0000838g0170 Nicotiana tabacum HOM05D009669 ORTHO05D000181 6.8e-10 67.8 105 32.4
SalBow2G2865 Salvia bowleyana HOM05D000275 ORTHO05D000181 6.8e-10 67.8 121 33.9
Atru.chr9.1983 Acer truncatum HOM05D000275 ORTHO05D000181 8.8e-10 67.4 100 40.0
Atru.chr9.1997 Acer truncatum HOM05D000275 ORTHO05D000181 8.8e-10 67.4 100 40.0
Aa31sc23G310 Aethionema arabicum HOM05D000275 ORTHO05D000181 8.8e-10 67.4 117 33.3
Ah.05g179660 Amaranthus hybridus HOM05D000275 ORTHO05D000181 8.8e-10 67.4 117 27.4
FAN10G1205 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.2e-09 67.0 94 34.0
FAN10G2621 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.2e-09 67.0 94 34.0
PGR031G1907 Punica granatum HOM05D000275 ORTHO05D000181 1.2e-09 67.0 123 33.3
Sed0001629 Sechium edule HOM05D000275 ORTHO05D000181 1.2e-09 67.0 117 32.5
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 1.5e-09 66.6 110 29.1
DCAR_020877 Daucus carota HOM05D000275 ORTHO05D000181 1.5e-09 66.6 114 35.1
AUR62004483 Chenopodium quinoa HOM05D000275 ORTHO05D000181 2.0e-09 66.2 113 30.1
Os01g0219500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D049927 2.0e-09 66.2 93 36.6
Sc01g0002760 Simmondsia chinensis HOM05D000275 ORTHO05D000181 2.0e-09 66.2 122 32.0
Gohir.D09G214700 Gossypium hirsutum HOM05D000275 ORTHO05D000181 2.6e-09 65.9 121 32.2
Gorai.006G235100 Gossypium raimondii HOM05D000275 ORTHO05D000181 2.6e-09 65.9 121 32.2
BcaB04g18572 Brassica carinata HOM05D000275 ORTHO05D000181 3.4e-09 65.5 91 33.0
CiPaw.12G083200 Carya illinoinensis HOM05D033107 ORTHO05D000181 3.4e-09 65.5 120 30.0
Sabra14G0071800 Salix brachista HOM05D009669 ORTHO05D000181 3.4e-09 65.5 112 31.2
Sed0025062 Sechium edule HOM05D000275 ORTHO05D000181 3.4e-09 65.5 121 31.4
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 5.7e-09 64.7 125 28.8
MSTRG.4810 Avicennia marina HOM05D009669 ORTHO05D000181 7.5e-09 64.3 122 30.3
Carub.0004s2052 Capsella rubella HOM05D000275 ORTHO05D000181 7.5e-09 64.3 123 30.1
Peaxi162Scf00129g00232 Petunia axillaris HOM05D000275 ORTHO05D000181 7.5e-09 64.3 120 34.2
Actinidia08273 Actinidia chinensis HOM05D000275 ORTHO05D000181 9.8e-09 63.9 117 33.3
CANSAT11G2344 Cannabis sativa HOM05D000275 ORTHO05D000181 9.8e-09 63.9 118 28.8
Eucgr.A01836 Eucalyptus grandis HOM05D007676 ORTHO05D009456 9.8e-09 63.9 122 31.1
Nitab4.5_0000125g0030 Nicotiana tabacum HOM05D000275 ORTHO05D000181 9.8e-09 63.9 94 36.2
arahy.Tifrunner.gnm1.ann1.EB1W4P Arachis hypogaea HOM05D000275 ORTHO05D000181 1.3e-08 63.5 115 26.1
C03p43980 Brassica napus HOM05D000275 ORTHO05D000181 1.3e-08 63.5 92 31.5
Carub.0003s3252 Capsella rubella HOM05D000275 ORTHO05D000181 1.3e-08 63.5 92 33.7
SEGI_33977 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 1.3e-08 63.5 75 37.3
GSVIVG01027088001 Vitis vinifera HOM05D009669 ORTHO05D000181 1.3e-08 63.5 119 29.4
Actinidia10131 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.7e-08 63.2 117 33.3
Actinidia11511 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.7e-08 63.2 113 34.5
TWI15G0613 Tripterygium wilfordii HOM05D000354 ORTHO05D000181 1.7e-08 63.2 123 27.6
BcaC01g04195 Brassica carinata HOM05D000275 ORTHO05D000181 2.2e-08 62.8 91 31.9
BolC3t16669H Brassica oleracea HOM05D000275 ORTHO05D000181 2.2e-08 62.8 91 31.9
PGSC0003DMG400031127 Solanum tuberosum HOM05D000275 ORTHO05D000181 2.2e-08 62.8 120 29.2
Hma1.2p1_0295F.1_g116650 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 2.8e-08 62.4 94 33.0
Rhsim02G0242900 Rhododendron simsii HOM05D000324 ORTHO05D001014 2.8e-08 62.4 96 32.3
Potri.001G232900 Populus trichocarpa HOM05D000275 ORTHO05D000181 3.7e-08 62.0 93 31.2
SalBow6G3305 Salvia bowleyana HOM05D000275 ORTHO05D000181 4.9e-08 61.6 122 32.8
PGSC0003DMG400001322 Solanum tuberosum HOM05D000275 ORTHO05D000181 6.3e-08 61.2 94 37.2
PGSC0003DMG400025539 Solanum tuberosum HOM05D000275 ORTHO05D000181 6.3e-08 61.2 122 27.9
Potri.001G232700 Populus trichocarpa HOM05D000275 ORTHO05D000181 8.3e-08 60.8 93 31.2
Eucgr.A00744 Eucalyptus grandis HOM05D000275 ORTHO05D000181 1.1e-07 60.5 103 32.0
HanXRQChr01g0000161 Helianthus annuus HOM05D000275 ORTHO05D000181 1.1e-07 60.5 120 33.3
Nn4g24938 Nelumbo nucifera HOM05D000275 ORTHO05D000181 1.1e-07 60.5 96 34.4
Solyc08g067540.1 Solanum lycopersicum HOM05D000275 ORTHO05D000181 1.1e-07 60.5 116 31.0
CAN.G199.36 Capsicum annuum HOM05D000275 ORTHO05D000181 1.4e-07 60.1 119 31.9
Zm00001eb383600 Zea mays HOM05D000275 ORTHO05D000181 1.4e-07 60.1 120 31.7
CAN.G348.15 Capsicum annuum HOM05D000275 ORTHO05D000181 2.4e-07 59.3 120 30.8
Prupe.3G183000 Prunus persica HOM05D000275 ORTHO05D000181 2.4e-07 59.3 122 27.0
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 3.1e-07 58.9 92 33.7
Nitab4.5_0000125g0010 Nicotiana tabacum HOM05D000275 ORTHO05D000181 3.1e-07 58.9 121 28.9
Solyc08g067550.1 Solanum lycopersicum HOM05D000275 ORTHO05D000181 3.1e-07 58.9 121 26.4
AL3G51640 Arabidopsis lyrata HOM05D000275 ORTHO05D000181 4.1e-07 58.5 93 33.3
arahy.Tifrunner.gnm1.ann1.JFR3PY Arachis hypogaea HOM05D000275 ORTHO05D000181 4.1e-07 58.5 89 30.3
BcaC04g22908 Brassica carinata HOM05D000275 ORTHO05D000181 4.1e-07 58.5 92 31.5
CAN.G1059.5 Capsicum annuum HOM05D000275 ORTHO05D000181 4.1e-07 58.5 95 32.6
CAN.G986.15 Capsicum annuum HOM05D000275 ORTHO05D000181 5.4e-07 58.2 116 32.8
Lsat_1_v5_gn_4_33221 Lactuca sativa HOM05D009669 ORTHO05D000181 5.4e-07 58.2 97 33.0
PSO017G0615 Papaver somniferum HOM05D000275 ORTHO05D000181 5.4e-07 58.2 121 28.1
AT2G18370 Arabidopsis thaliana HOM05D000275 ORTHO05D000181 7.0e-07 57.8 93 33.3
CARHR108960 Cardamine hirsuta HOM05D000275 ORTHO05D000181 7.0e-07 57.8 92 30.4
DCAR_023978 Daucus carota HOM05D000275 ORTHO05D000181 7.0e-07 57.8 92 35.9
Nitab4.5_0000851g0010 Nicotiana tabacum HOM05D000275 ORTHO05D000181 7.0e-07 57.8 117 30.8
Phvul.008G087000 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 7.0e-07 57.8 115 30.4
Solyc08g067530.1 Solanum lycopersicum HOM05D000275 ORTHO05D000181 7.0e-07 57.8 118 28.0
Nitab4.5_0003696g0070 Nicotiana tabacum HOM05D000275 ORTHO05D000181 9.2e-07 57.4 119 30.3
C09p13960 Brassica napus HOM05D000275 ORTHO05D000181 1.2e-06 57.0 90 31.1
BolC9t54291H Brassica oleracea HOM05D000275 ORTHO05D000181 1.2e-06 57.0 90 31.1
Thhalv10022915m.g Eutrema salsugineum HOM05D000275 ORTHO05D000181 1.2e-06 57.0 118 27.1
Sopen08g021470 Solanum pennellii HOM05D000275 ORTHO05D000181 1.6e-06 56.6 118 28.8
PGSC0003DMG400044717 Solanum tuberosum HOM05D000275 ORTHO05D000181 1.6e-06 56.6 112 29.5
BcaB07g31671 Brassica carinata HOM05D000275 ORTHO05D000181 2.0e-06 56.2 112 27.7
CAN.G362.4 Capsicum annuum HOM05D000275 ORTHO05D000181 2.0e-06 56.2 112 30.4
Sopen08g021460 Solanum pennellii HOM05D000275 ORTHO05D000181 2.0e-06 56.2 120 26.7
A09p11880 Brassica napus HOM05D000275 ORTHO05D000181 2.7e-06 55.8 90 30.0
BraA09t36833Z Brassica rapa HOM05D000275 ORTHO05D000181 2.7e-06 55.8 90 30.0
CAN.G206.145 Capsicum annuum HOM05D000275 ORTHO05D000181 2.7e-06 55.8 84 41.7
Sopen08g021480 Solanum pennellii HOM05D000006 ORTHO05D000695 2.7e-06 55.8 107 29.9
PGSC0003DMG400015092 Solanum tuberosum HOM05D000275 ORTHO05D000181 2.7e-06 55.8 109 29.4
Sp3g31780 Schrenkiella parvula HOM05D000275 ORTHO05D000181 3.5e-06 55.5 90 28.9
SpUn0030_0050 Schrenkiella parvula HOM05D000275 ORTHO05D000181 3.5e-06 55.5 90 28.9
Atru.chr1.2501 Acer truncatum HOM05D000275 ORTHO05D003378 4.5e-06 55.1 111 29.7
Sopen08g021490 Solanum pennellii HOM05D000275 ORTHO05D000181 5.9e-06 54.7 117 25.6
PGSC0003DMG400016102 Solanum tuberosum HOM05D000275 ORTHO05D000181 5.9e-06 54.7 111 27.9
GSVIVG01032682001 Vitis vinifera HOM05D000275 ORTHO05D000181 5.9e-06 54.7 117 29.1


User provided reference genes

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