Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 5.8e-261 904.0 591 100.0
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.6e-181 640.2 605 63.3
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 5.1e-180 635.2 620 64.7
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.5e-176 623.6 609 57.6
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 7.6e-176 621.3 616 67.2
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 3.2e-174 615.9 610 63.8
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 4.6e-173 612.1 584 74.5
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 1.3e-148 530.8 591 59.4
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 5.7e-147 525.4 614 61.6
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 1.9e-139 500.4 618 57.3
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 1.3e-138 497.7 580 58.4
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 3.4e-136 489.6 588 52.6
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 4.2e-134 482.6 586 58.2
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 5.5e-134 482.3 602 48.8
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 7.9e-133 478.4 606 50.3
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 2.5e-131 473.4 591 54.5
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 2.5e-131 473.4 579 63.0
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 1.2e-128 464.5 575 55.0
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 5.0e-127 459.1 610 46.7
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 6.5e-127 458.8 587 54.3
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 6.5e-127 458.8 575 54.3
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 1.1e-126 458.0 587 53.2
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 2.5e-126 456.8 579 56.1
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 4.2e-126 456.1 573 54.6
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 1.2e-125 454.5 587 58.3
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 4.7e-125 452.6 587 58.4
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 3.9e-124 449.5 581 57.5
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 6.7e-124 448.7 583 55.4
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 1.7e-122 444.1 591 55.7
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 1.2e-120 438.0 591 55.2
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 2.0e-120 437.2 591 52.6
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 1.0e-116 424.9 602 49.7
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 3.0e-116 423.3 572 60.8
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 5.2e-116 422.5 571 52.4
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 4.4e-115 419.5 526 59.3
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 4.1e-113 412.9 580 58.3
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 1.6e-112 411.0 572 60.3
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 7.7e-112 408.7 576 51.9
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 7.7e-112 408.7 576 51.4
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 2.7e-109 400.2 593 55.8
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 4.7e-109 399.4 575 51.7
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 1.0e-108 398.3 578 51.2
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 2.3e-108 397.1 593 54.5
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 6.8e-108 395.6 579 48.9
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 1.2e-107 394.8 601 54.9
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 2.6e-107 393.7 621 48.8
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 2.4e-105 387.1 549 57.4
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 5.4e-105 386.0 579 50.1
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 2.7e-104 383.6 584 46.1
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 3.5e-104 383.3 579 49.6
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 7.7e-104 382.1 594 53.5
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 1.0e-100 371.7 543 49.0
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 1.8e-100 370.9 620 44.2
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 5.2e-100 369.4 582 51.0
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.2e-99 368.2 515 56.9
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 7.5e-99 365.5 591 50.1
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 3.7e-98 363.2 505 55.8
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 7.0e-97 359.0 574 53.8
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 1.2e-96 358.2 582 45.5
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 2.7e-96 357.1 614 46.4
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 1.0e-95 355.1 579 49.1
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.3e-95 354.8 386 67.9
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 2.3e-95 354.0 580 50.2
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 5.6e-94 349.4 602 45.0
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 7.3e-94 349.0 464 56.0
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 9.5e-94 348.6 613 43.7
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 2.3e-92 344.0 534 44.2
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 4.0e-92 343.2 596 46.8
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 4.0e-92 343.2 326 68.1
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 4.0e-92 343.2 579 48.9
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 6.8e-92 342.4 593 52.3
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 1.3e-90 338.2 594 45.8
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 3.7e-90 336.7 545 46.6
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 3.5e-88 330.1 596 47.3
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 5.9e-88 329.3 592 45.3
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 5.9e-88 329.3 592 45.3
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 1.0e-87 328.6 584 47.1
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 8.6e-87 325.5 582 50.7
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 8.6e-87 325.5 581 47.2
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 1.5e-86 324.7 590 47.5
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 5.6e-86 322.8 581 51.5
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 7.3e-86 322.4 592 44.9
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 5.2e-84 316.2 587 42.2
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 5.2e-84 316.2 587 42.2
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 4.9e-82 309.7 321 64.5
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 2.0e-80 304.3 501 51.1
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 6.0e-80 302.8 583 49.2
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 5.0e-79 299.7 370 69.7
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 6.6e-79 299.3 495 54.7
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 4.3e-78 296.6 595 49.7
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 2.8e-77 293.9 597 50.1
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 8.1e-77 292.4 592 50.7
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 4.0e-76 290.0 587 49.9
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.5e-75 288.1 608 36.3
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.5e-75 288.1 608 36.3
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 1.9e-73 281.2 594 45.3
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 3.0e-71 273.9 597 45.7
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 3.4e-67 260.4 590 49.2
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 5.8e-67 259.6 575 44.7
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 1.4e-60 238.4 545 43.5
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 6.9e-60 236.1 606 28.9
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 4.2e-57 226.9 497 43.7
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 5.6e-54 216.5 533 41.7
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 1.8e-44 184.9 523 31.4
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 1.8e-36 158.3 224 45.5
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 7.4e-30 136.3 346 45.7
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 5.9e-27 126.7 223 46.2
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 9.3e-25 119.4 113 55.8
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 5.1e-23 113.6 157 40.8
Hma1.2p1_0450F.1_g155520 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 4.1e-12 77.4 155 37.4
Cpa.g.sc79.39 Carica papaya HOM05D006572 ORTHO05D008181 3.8e-10 70.9 72 56.9
Hma1.2p1_0082F.1_g042550 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 8.5e-10 69.7 49 75.5
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 1.1e-09 69.3 89 44.9
Hma1.2p1_1530F.1_g289190 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 5.5e-09 67.0 49 73.5
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 4.7e-08 63.9 48 64.6
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 1.4e-07 62.4 48 62.5
Prupe.2G005400 Prunus persica HOM05D006572 ORTHO05D008181 1.1e-06 59.3 42 71.4
HanXRQChr09g0272151 Helianthus annuus HOM05D006572 ORTHO05D008181 1.5e-06 58.9 51 60.8
Cre12.g535400 Chlamydomonas reinhardtii HOM05D006572 ORTHO05D008181 5.7e-06 57.0 131 34.4


User provided reference genes

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