Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.1e-274 948.3 457 100.0
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.3e-247 859.4 445 92.1
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 6.8e-233 810.4 459 83.0
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 6.4e-231 803.9 458 82.1
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.6e-229 799.3 457 81.6
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 6.0e-229 797.3 462 81.2
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 6.0e-229 797.3 457 82.7
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.6e-226 788.1 459 80.8
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.6e-226 788.1 459 80.8
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 8.1e-226 786.9 452 83.8
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 2.3e-225 785.4 457 80.3
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 6.8e-225 783.9 457 79.6
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 8.9e-225 783.5 459 80.8
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.5e-224 782.7 458 82.1
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 4.4e-224 781.2 439 82.5
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.8e-224 780.8 457 79.6
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 5.8e-224 780.8 459 79.3
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.7e-223 778.1 453 81.0
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.4e-222 776.2 471 78.6
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.4e-222 776.2 449 80.4
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 3.2e-222 775.0 459 79.7
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 7.1e-222 773.9 457 79.0
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 7.8e-221 770.4 458 79.5
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.7e-220 769.2 464 78.0
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 5.1e-220 767.7 457 79.9
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 2.1e-218 762.3 439 82.9
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.5e-216 756.1 472 78.4
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 3.4e-216 755.0 457 78.6
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 3.4e-216 755.0 461 77.7
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.4e-216 755.0 460 76.7
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 2.2e-215 752.3 463 75.8
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 2.2e-215 752.3 460 76.5
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 3.8e-215 751.5 457 77.9
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 8.4e-215 750.4 437 82.6
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.1e-214 748.0 473 77.8
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 7.1e-214 747.3 452 77.4
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.2e-213 746.5 459 76.5
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.6e-213 746.1 457 79.2
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.0e-212 743.4 460 76.7
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.1e-212 741.1 458 78.8
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 5.1e-212 741.1 450 78.0
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.9e-211 739.2 446 77.8
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.3e-211 738.4 459 76.9
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.2e-210 736.5 460 73.5
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.1e-209 731.9 460 74.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.2e-208 729.9 465 75.3
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.6e-208 728.8 428 79.7
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.4e-208 728.4 460 75.0
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 7.6e-208 727.2 432 79.4
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 9.9e-208 726.9 460 74.8
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.3e-207 726.5 428 79.2
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.3e-207 726.5 431 79.4
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.9e-207 725.3 428 80.1
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 2.9e-207 725.3 431 78.7
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.9e-207 724.5 460 74.6
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.4e-206 723.0 464 74.4
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 7.1e-206 720.7 451 75.2
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.6e-205 719.5 428 78.7
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.1e-205 719.2 459 73.4
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 9.6e-203 710.3 457 73.1
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.6e-202 708.4 454 74.2
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 3.6e-202 708.4 434 76.3
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 8.1e-202 707.2 475 71.8
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 5.3e-201 704.5 459 73.6
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 7.6e-200 700.7 457 71.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.7e-199 699.5 440 76.1
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 3.5e-197 691.8 459 71.5
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.1e-195 686.8 396 80.3
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.5e-195 686.4 459 71.5
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.5e-195 685.6 489 71.6
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.3e-195 685.3 459 70.8
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.2e-194 681.0 465 71.0
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.4e-193 679.9 410 77.6
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.0e-193 678.3 459 70.6
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.5e-192 676.4 443 74.0
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.3e-191 673.3 498 66.7
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.9e-191 672.2 459 71.7
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 6.4e-191 671.0 458 70.1
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.6e-189 666.4 457 66.7
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.6e-189 664.8 458 67.7
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 7.9e-189 664.1 459 67.8
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 3.9e-188 661.8 461 67.7
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 8.7e-188 660.6 458 68.3
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.5e-187 659.8 458 67.2
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.9e-187 659.4 466 67.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 4.8e-186 654.8 460 67.2
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-185 653.3 460 67.0
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.8e-185 652.9 451 68.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.2e-184 650.2 462 66.9
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.2e-184 650.2 462 66.9
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 2.6e-184 649.0 462 66.7
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.7e-183 646.4 467 67.9
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.7e-183 646.4 461 66.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.7e-183 646.4 457 68.1
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 3.2e-182 642.1 461 66.6
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.3e-180 636.7 464 68.3
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.0e-180 635.6 368 80.2
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.9e-179 632.9 386 77.2
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 7.4e-179 630.9 451 67.0
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 2.1e-178 629.4 465 68.4
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 2.6e-176 622.5 402 73.4
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.4e-174 616.7 535 60.2
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 9.3e-174 614.0 464 63.1
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 3.9e-172 608.6 422 70.4
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 3.9e-172 608.6 382 76.7
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.0e-167 594.0 489 60.5
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.3e-167 593.6 432 63.7
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.3e-167 593.6 475 62.9
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 6.5e-167 591.3 443 66.6
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 2.5e-166 589.3 405 68.6
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 7.9e-165 584.3 426 66.0
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 5.9e-152 541.6 460 54.1
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.9e-151 539.3 436 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 5.5e-150 535.0 458 56.6
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 4.7e-149 531.9 429 56.2
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.8e-148 530.0 353 72.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 4.2e-142 508.8 428 59.8
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-140 503.8 483 55.5
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 6.5e-135 485.0 281 84.0
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.5e-134 481.9 292 78.1
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.8e-133 479.6 486 51.4
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-126 457.6 457 55.1
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 2.1e-125 453.4 292 73.3
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 4.9e-122 442.2 334 66.5
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 8.3e-122 441.4 414 57.5
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.8e-120 434.9 347 59.9
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.8e-120 434.9 347 59.9
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 4.1e-105 386.0 378 48.7
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 7.8e-104 381.7 210 83.3
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-93 347.4 215 81.4
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 9.9e-91 338.2 284 61.3
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.9e-90 336.7 413 41.2
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 3.2e-89 333.2 436 41.3
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-75 287.7 177 78.0
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-56 224.9 222 58.6
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 7.9e-56 222.2 119 82.4
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 6.7e-55 219.2 187 57.2
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.0e-51 207.6 222 50.0
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 6.1e-48 196.1 159 62.3
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 2.6e-46 190.7 109 84.4
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.0e-44 182.6 243 46.1
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.6e-43 180.6 241 46.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 5.0e-42 176.4 236 42.4
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 4.4e-38 163.3 196 46.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 7.0e-36 156.0 99 74.7
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.6e-35 154.8 85 81.2
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.0e-31 140.6 241 39.8
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.2e-25 120.2 85 68.2
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 4.2e-25 120.2 71 73.2
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.0e-23 115.5 62 85.5
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.1e-20 105.5 135 40.0
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 3.1e-20 104.0 70 71.4
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.4e-14 84.0 80 58.8
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 8.3e-13 79.3 61 68.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.6e-10 69.3 36 86.1
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 7.3e-09 66.2 42 66.7


User provided reference genes

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