Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G117300 Prunus persica HOM05D007275 ORTHO05D009279 4.5e-46 187.6 96 100.0
MD06G1104700 Malus domestica HOM05D007275 ORTHO05D009279 4.4e-41 171.0 96 89.6
MD14G1123400 Malus domestica HOM05D007275 ORTHO05D009279 2.2e-40 168.7 96 89.6
Actinidia22145 Actinidia chinensis HOM05D007275 ORTHO05D009279 1.7e-37 159.1 96 84.4
Dinv38844 Davidia involucrata HOM05D007275 ORTHO05D009279 1.7e-37 159.1 96 84.4
CSS0010422 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 5.0e-37 157.5 94 84.0
Hma1.2p1_0359F.1_g135280 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 5.0e-37 157.5 96 81.2
Cc08_g15930 Coffea canephora HOM05D007275 ORTHO05D009279 6.6e-37 157.1 96 82.3
QL02p030913 Quercus lobata HOM05D007275 ORTHO05D009279 1.9e-36 155.6 95 81.1
RcHm_v2.0_Chr7g0195121 Rosa chinensis HOM05D007275 ORTHO05D009279 3.3e-36 154.8 96 81.2
GSVIVG01019513001 Vitis vinifera HOM05D007275 ORTHO05D009279 9.5e-36 153.3 96 81.2
Phvul.002G297500 Phaseolus vulgaris HOM05D007275 ORTHO05D009279 2.1e-35 152.1 96 80.2
Nitab4.5_0000726g0090 Nicotiana tabacum HOM05D007275 ORTHO05D009279 3.6e-35 151.4 94 77.7
CANSAT21G2355 Cannabis sativa HOM05D007275 ORTHO05D009279 4.7e-35 151.0 93 81.7
Cfa012796 Carpinus fangiana HOM05D007275 ORTHO05D009279 4.7e-35 151.0 90 84.4
CiPaw.12G084200 Carya illinoinensis HOM05D007275 ORTHO05D009279 4.7e-35 151.0 96 78.1
Peaxi162Scf00074g01033 Petunia axillaris HOM05D007275 ORTHO05D009279 4.7e-35 151.0 90 82.2
AUR62010827 Chenopodium quinoa HOM05D007275 ORTHO05D009279 8.0e-35 150.2 96 79.2
Haze_08628 Corylus avellana HOM05D007275 ORTHO05D009279 8.0e-35 150.2 90 83.3
Ciclev10024283m.g Citrus clementina HOM05D007275 ORTHO05D009279 1.4e-34 149.4 88 83.0
Gohir.D12G236900 Gossypium hirsutum HOM05D007275 ORTHO05D009279 1.8e-34 149.1 96 78.1
Gorai.008G253500 Gossypium raimondii HOM05D007275 ORTHO05D009279 1.8e-34 149.1 96 78.1
Oeu038573.1 Olea europaea HOM05D007275 ORTHO05D009279 1.8e-34 149.1 96 77.1
Potri.001G092700 Populus trichocarpa HOM05D007275 ORTHO05D009279 1.8e-34 149.1 94 79.8
CAN.G532.107 Capsicum annuum HOM05D007275 ORTHO05D009279 3.1e-34 148.3 96 76.0
Thecc.03G296000 Theobroma cacao HOM05D007275 ORTHO05D009279 3.1e-34 148.3 96 79.2
Gohir.A12G235700 Gossypium hirsutum HOM05D007275 ORTHO05D009279 4.0e-34 147.9 96 77.1
Nitab4.5_0010144g0020 Nicotiana tabacum HOM05D007275 ORTHO05D009279 4.0e-34 147.9 96 77.1
Peaxi162Scf00117g01123 Petunia axillaris HOM05D007275 ORTHO05D009279 6.8e-34 147.1 96 77.1
EL10Ac5g12903 Beta vulgaris HOM05D007275 ORTHO05D009279 8.9e-34 146.7 96 75.0
Glyma.05G216300 Glycine max HOM05D007275 ORTHO05D009279 8.9e-34 146.7 92 78.3
Glyma.08G022200 Glycine max HOM05D007275 ORTHO05D009279 8.9e-34 146.7 92 78.3
Hma1.2p1_0229F.1_g097175 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 8.9e-34 146.7 90 81.1
Hma1.2p1_0229F.1_g097200 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 8.9e-34 146.7 90 81.1
DCAR_005035 Daucus carota HOM05D007275 ORTHO05D009279 1.5e-33 146.0 97 77.3
SalBow1G5261 Salvia bowleyana HOM05D007275 ORTHO05D009279 1.5e-33 146.0 96 75.0
Lj4g0015273 Lotus japonicus HOM05D007275 ORTHO05D009279 2.0e-33 145.6 92 78.3
Manes.02G011100 Manihot esculenta HOM05D007275 ORTHO05D009279 2.0e-33 145.6 92 81.5
FvH4_5g04420 Fragaria vesca HOM05D007275 ORTHO05D009279 2.6e-33 145.2 97 76.3
FAN18G1142 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.6e-33 145.2 97 76.3
FAN18G2266 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.6e-33 145.2 97 76.3
Nitab4.5_0000223g0330 Nicotiana tabacum HOM05D007275 ORTHO05D009279 2.6e-33 145.2 90 80.0
Atru.chr9.2015 Acer truncatum HOM05D007275 ORTHO05D009279 3.4e-33 144.8 88 81.8
Nn1g01839 Nelumbo nucifera HOM05D007275 ORTHO05D009279 3.4e-33 144.8 90 81.1
Sabra01G0069000 Salix brachista HOM05D007275 ORTHO05D009279 3.4e-33 144.8 94 77.7
Migut.A00668 Erythranthe guttata HOM05D007275 ORTHO05D009279 4.4e-33 144.4 95 73.7
SalBow1G0766 Salvia bowleyana HOM05D007275 ORTHO05D009279 4.4e-33 144.4 96 74.0
COL.COLO4_10681 Corchorus olitorius HOM05D007275 ORTHO05D009279 5.8e-33 144.1 96 77.1
Sc01g0010220 Simmondsia chinensis HOM05D007275 ORTHO05D009279 5.8e-33 144.1 90 82.2
CSS0024458 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 7.5e-33 143.7 96 77.1
TAR375G1117 Trochodendron aralioides HOM05D007275 ORTHO05D009279 9.8e-33 143.3 90 81.1
arahy.Tifrunner.gnm1.ann1.GQP3LI Arachis hypogaea HOM05D007275 ORTHO05D009279 2.2e-32 142.1 94 72.3
Gohir.D11G024100 Gossypium hirsutum HOM05D007275 ORTHO05D009279 2.2e-32 142.1 94 74.5
Gorai.007G025800 Gossypium raimondii HOM05D007275 ORTHO05D009279 2.2e-32 142.1 94 74.5
TPR.G3422 Trifolium pratense HOM05D007275 ORTHO05D009279 2.2e-32 142.1 96 74.0
FAN08G0060 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.9e-32 141.7 96 74.0
PGSC0003DMG400012158 Solanum tuberosum HOM05D007275 ORTHO05D009279 2.9e-32 141.7 96 72.9
Gohir.A11G024400 Gossypium hirsutum HOM05D007275 ORTHO05D009279 3.7e-32 141.4 94 74.5
arahy.Tifrunner.gnm1.ann1.IALD8X Arachis hypogaea HOM05D007275 ORTHO05D009279 4.9e-32 141.0 94 71.3
Nn3g19047 Nelumbo nucifera HOM05D007275 ORTHO05D009279 4.9e-32 141.0 90 77.8
FvH4_3g01740 Fragaria vesca HOM05D007275 ORTHO05D009279 8.3e-32 140.2 97 72.2
Lalb_Chr16g0390621 Lupinus albus HOM05D007275 ORTHO05D009279 8.3e-32 140.2 93 73.1
Solyc08g082160.3 Solanum lycopersicum HOM05D007275 ORTHO05D009279 8.3e-32 140.2 96 74.0
Sopen08g030440 Solanum pennellii HOM05D007275 ORTHO05D009279 8.3e-32 140.2 96 74.0
Dinv37542 Davidia involucrata HOM05D007275 ORTHO05D009279 1.1e-31 139.8 84 83.3
Eucgr.D01727 Eucalyptus grandis HOM05D007275 ORTHO05D009279 1.1e-31 139.8 96 74.0
TAR629G0721 Trochodendron aralioides HOM05D007275 ORTHO05D010861 3.2e-31 138.3 91 78.0
PGR031G2423 Punica granatum HOM05D007275 ORTHO05D009279 5.4e-31 137.5 96 71.9
Sabra03G0100000 Salix brachista HOM05D007275 ORTHO05D009279 9.2e-31 136.7 87 75.9
MBI06_g46619_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D009279 3.5e-30 134.8 88 76.1
MBI06_g46730_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D000022 3.5e-30 134.8 88 76.1
Potri.003G138800 Populus trichocarpa HOM05D007275 ORTHO05D009279 3.5e-30 134.8 87 74.7
Medtr8g099385 Medicago truncatula HOM05D007275 ORTHO05D009279 7.8e-30 133.7 93 71.0
ECA246G4125 Erigeron canadensis HOM05D007275 ORTHO05D009279 2.3e-29 132.1 87 72.4
HanXRQChr17g0535191 Helianthus annuus HOM05D007275 ORTHO05D009279 3.0e-29 131.7 96 65.6
FAN13G1788 Fragaria x ananassa HOM05D007275 ORTHO05D009279 5.0e-29 131.0 125 59.2
HanXRQChr06g0166541 Helianthus annuus HOM05D007275 ORTHO05D009279 5.0e-29 131.0 86 72.1
Lsat_1_v5_gn_3_10301 Lactuca sativa HOM05D007275 ORTHO05D009279 8.6e-29 130.2 94 68.1
ClCG07G014960 Citrullus lanatus HOM05D007275 ORTHO05D009279 1.9e-28 129.0 87 70.1
Zm00001eb338790 Zea mays HOM05D007275 ORTHO05D009279 1.9e-28 129.0 91 74.7
Aqoxy7G00131 Aquilegia oxysepala HOM05D007275 ORTHO05D009279 9.5e-28 126.7 96 66.7
TWI60G1254 Tripterygium wilfordii HOM05D007275 ORTHO05D009279 8.0e-27 123.6 92 67.4
AUR62019826 Chenopodium quinoa HOM05D007275 ORTHO05D009279 4.0e-26 121.3 75 78.7
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 5.2e-26 120.9 69 81.2
unitig_748.g8124 Utricularia gibba HOM05D007275 ORTHO05D009279 2.0e-25 119.0 86 69.8
CDE10G0124 Ceratophyllum demersum HOM05D007275 ORTHO05D009279 2.6e-25 118.6 82 68.3
MELO3C032816.2 Cucumis melo HOM05D007275 ORTHO05D009279 2.6e-25 118.6 87 66.7
CsaV3_4G006490 Cucumis sativus L. HOM05D007275 ORTHO05D009279 3.4e-25 118.2 87 66.7
Oeu063532.1 Olea europaea HOM05D007275 ORTHO05D009279 4.4e-25 117.9 84 70.2
Nitab4.5_0007661g0010 Nicotiana tabacum HOM05D007275 ORTHO05D009279 5.8e-25 117.5 69 78.3
Hma1.2p1_2596F.1_g325120 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 1.7e-24 115.9 69 84.1
CSS0026606 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 2.2e-24 115.5 68 80.9
ATR0320G041 Amborella trichopoda HOM05D007275 ORTHO05D009279 2.9e-24 115.2 90 65.6
CDE10G0242 Ceratophyllum demersum HOM05D000974 ORTHO05D002201 2.9e-24 115.2 84 64.3
Sed0004885 Sechium edule HOM05D007275 ORTHO05D009279 6.4e-24 114.0 88 64.8
Duzib068G1121 Durio zibethinus HOM05D007275 ORTHO05D009279 2.4e-23 112.1 72 80.6
BcaC09g50944 Brassica carinata HOM05D007275 ORTHO05D009279 3.2e-23 111.7 94 56.4
A01p15130 Brassica napus HOM05D007275 ORTHO05D009279 3.2e-23 111.7 94 56.4
C01p19030 Brassica napus HOM05D007275 ORTHO05D009279 3.2e-23 111.7 94 56.4
BolC1t01829H Brassica oleracea HOM05D007275 ORTHO05D009279 3.2e-23 111.7 94 56.4
BcaNung01089 Brassica carinata HOM05D007275 ORTHO05D009279 2.1e-22 109.0 94 56.4
Psat7g026480 Pisum sativum HOM05D007275 ORTHO05D009279 2.1e-22 109.0 92 63.0
BcaNung01088 Brassica carinata HOM05D007275 ORTHO05D009279 2.7e-22 108.6 94 56.4
Rhsim02G0242000 Rhododendron simsii HOM05D007275 ORTHO05D009279 3.9e-21 104.8 82 70.7
FAN04G0348 Fragaria x ananassa HOM05D007275 ORTHO05D009279 1.2e-19 99.8 97 58.8
SEGI_25349 Sequoiadendron giganteum HOM05D007275 ORTHO05D009279 1.2e-19 99.8 94 53.2
Thhalv10027148m.g Eutrema salsugineum HOM05D007275 ORTHO05D009279 1.2e-14 83.2 67 61.2
Lalb_Chr16g0390631 Lupinus albus HOM05D007275 ORTHO05D009279 1.3e-13 79.7 50 76.0
Aqoxy2G01184 Aquilegia oxysepala HOM05D000015 ORTHO05D009146 7.8e-06 53.9 94 42.6
Manes.17G027600 Manihot esculenta HOM05D000015 ORTHO05D009146 7.8e-06 53.9 79 41.8


User provided reference genes

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